Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6127 and GFF6128 are separated by 228 nucleotides GFF6128 and GFF6129 overlap by 4 nucleotides GFF6129 and GFF6130 are separated by 22 nucleotides
GFF6127 - Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit, at 28,139 to 29,281
GFF6127
GFF6128 - Exodeoxyribonuclease VII small subunit (EC 3.1.11.6), at 29,510 to 29,776
GFF6128
GFF6129 - (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10), at 29,773 to 30,696
GFF6129
GFF6130 - 1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7), at 30,719 to 32,572
GFF6130
Position (kb) 29
30 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 28.512 kb on + strand, within GFF6127 at 28.512 kb on + strand, within GFF6127 at 28.542 kb on + strand, within GFF6127 at 28.542 kb on + strand, within GFF6127 at 28.543 kb on - strand, within GFF6127 at 28.599 kb on + strand, within GFF6127 at 28.599 kb on + strand, within GFF6127 at 28.689 kb on + strand, within GFF6127 at 28.690 kb on - strand, within GFF6127 at 28.690 kb on - strand, within GFF6127 at 28.690 kb on - strand, within GFF6127 at 28.716 kb on + strand, within GFF6127 at 28.716 kb on + strand, within GFF6127 at 28.716 kb on + strand, within GFF6127 at 28.716 kb on + strand, within GFF6127 at 28.716 kb on + strand, within GFF6127 at 28.716 kb on + strand, within GFF6127 at 28.716 kb on + strand, within GFF6127 at 28.717 kb on - strand, within GFF6127 at 28.717 kb on - strand, within GFF6127 at 28.717 kb on - strand, within GFF6127 at 28.717 kb on - strand, within GFF6127 at 28.752 kb on + strand, within GFF6127 at 28.753 kb on - strand, within GFF6127 at 28.869 kb on + strand, within GFF6127 at 28.870 kb on - strand, within GFF6127 at 28.953 kb on + strand, within GFF6127 at 28.953 kb on + strand, within GFF6127 at 28.954 kb on - strand, within GFF6127 at 28.954 kb on - strand, within GFF6127 at 29.163 kb on + strand, within GFF6127 at 29.164 kb on - strand, within GFF6127 at 29.164 kb on - strand, within GFF6127 at 29.205 kb on + strand at 29.205 kb on + strand at 29.205 kb on + strand at 29.205 kb on + strand at 29.205 kb on + strand at 29.206 kb on - strand at 29.206 kb on - strand at 29.270 kb on + strand at 29.270 kb on + strand at 29.271 kb on - strand at 29.271 kb on - strand at 29.400 kb on + strand at 29.401 kb on - strand at 29.478 kb on - strand at 29.478 kb on - strand at 29.561 kb on - strand, within GFF6128 at 29.582 kb on + strand, within GFF6128 at 29.666 kb on + strand, within GFF6128 at 29.666 kb on + strand, within GFF6128 at 29.667 kb on - strand, within GFF6128 at 30.550 kb on + strand, within GFF6129 at 30.550 kb on + strand, within GFF6129 at 30.550 kb on + strand, within GFF6129 at 30.550 kb on + strand, within GFF6129 at 30.550 kb on + strand, within GFF6129 at 30.550 kb on + strand, within GFF6129 at 30.550 kb on + strand, within GFF6129 at 30.550 kb on + strand, within GFF6129 at 30.550 kb on + strand, within GFF6129 at 30.550 kb on + strand, within GFF6129 at 30.550 kb on + strand, within GFF6129 at 30.550 kb on + strand, within GFF6129 at 30.551 kb on - strand, within GFF6129 at 30.551 kb on - strand, within GFF6129 at 30.551 kb on - strand, within GFF6129 at 30.551 kb on - strand, within GFF6129 at 30.551 kb on - strand, within GFF6129 at 30.551 kb on - strand, within GFF6129 at 30.551 kb on - strand, within GFF6129 at 30.551 kb on - strand, within GFF6129 at 30.551 kb on - strand, within GFF6129 at 30.551 kb on - strand, within GFF6129 at 30.551 kb on - strand, within GFF6129 at 30.554 kb on + strand, within GFF6129 at 30.555 kb on - strand, within GFF6129 at 30.555 kb on - strand, within GFF6129
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 28,512 + GFF6127 0.33 -3.2 28,512 + GFF6127 0.33 -2.8 28,542 + GFF6127 0.35 -1.0 28,542 + GFF6127 0.35 -0.8 28,543 - GFF6127 0.35 -4.4 28,599 + GFF6127 0.40 +0.2 28,599 + GFF6127 0.40 -2.9 28,689 + GFF6127 0.48 -2.2 28,690 - GFF6127 0.48 -2.4 28,690 - GFF6127 0.48 -3.1 28,690 - GFF6127 0.48 -2.7 28,716 + GFF6127 0.50 -2.9 28,716 + GFF6127 0.50 -3.2 28,716 + GFF6127 0.50 -2.1 28,716 + GFF6127 0.50 -0.1 28,716 + GFF6127 0.50 -1.8 28,716 + GFF6127 0.50 +0.2 28,716 + GFF6127 0.50 -2.5 28,717 - GFF6127 0.51 -2.9 28,717 - GFF6127 0.51 -1.7 28,717 - GFF6127 0.51 -1.4 28,717 - GFF6127 0.51 -3.7 28,752 + GFF6127 0.54 -1.1 28,753 - GFF6127 0.54 -2.8 28,869 + GFF6127 0.64 -2.8 28,870 - GFF6127 0.64 -2.0 28,953 + GFF6127 0.71 -0.6 28,953 + GFF6127 0.71 -2.0 28,954 - GFF6127 0.71 +0.2 28,954 - GFF6127 0.71 -0.8 29,163 + GFF6127 0.90 -3.2 29,164 - GFF6127 0.90 +2.7 29,164 - GFF6127 0.90 -1.7 29,205 + -1.5 29,205 + -3.4 29,205 + -1.0 29,205 + -2.1 29,205 + -2.1 29,206 - -1.6 29,206 - -2.1 29,270 + -2.1 29,270 + -2.3 29,271 - -1.7 29,271 - -1.1 29,400 + +4.5 29,401 - -0.8 29,478 - -2.9 29,478 - -0.4 29,561 - GFF6128 0.19 -0.1 29,582 + GFF6128 0.27 -0.4 29,666 + GFF6128 0.58 -1.1 29,666 + GFF6128 0.58 +2.2 29,667 - GFF6128 0.59 +3.0 30,550 + GFF6129 0.84 +1.0 30,550 + GFF6129 0.84 +0.5 30,550 + GFF6129 0.84 +0.6 30,550 + GFF6129 0.84 -0.6 30,550 + GFF6129 0.84 -0.4 30,550 + GFF6129 0.84 -0.5 30,550 + GFF6129 0.84 -2.6 30,550 + GFF6129 0.84 -0.1 30,550 + GFF6129 0.84 -1.8 30,550 + GFF6129 0.84 -1.0 30,550 + GFF6129 0.84 -0.1 30,550 + GFF6129 0.84 -1.1 30,551 - GFF6129 0.84 +0.6 30,551 - GFF6129 0.84 +0.2 30,551 - GFF6129 0.84 -0.1 30,551 - GFF6129 0.84 -0.4 30,551 - GFF6129 0.84 +1.2 30,551 - GFF6129 0.84 +2.2 30,551 - GFF6129 0.84 +0.2 30,551 - GFF6129 0.84 +0.2 30,551 - GFF6129 0.84 +0.2 30,551 - GFF6129 0.84 +1.2 30,551 - GFF6129 0.84 -0.8 30,554 + GFF6129 0.85 -2.5 30,555 - GFF6129 0.85 -0.1 30,555 - GFF6129 0.85 -1.3
Or see this region's nucleotide sequence