Strain Fitness in Variovorax sp. SCN45 around GFF6033

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
92,528	+		GFF6032	0.24	-2.3
92,528	+		GFF6032	0.24	-1.0
92,528	+		GFF6032	0.24	-0.2
92,528	+		GFF6032	0.24	-3.5
92,528	+		GFF6032	0.24	-0.2
92,528	+		GFF6032	0.24	-1.7
92,874	-		GFF6032	0.52	-0.6
92,874	-		GFF6032	0.52	-1.6
92,874	-		GFF6032	0.52	-0.4
92,874	-		GFF6032	0.52	-2.2
92,874	-		GFF6032	0.52	+0.6
92,874	-		GFF6032	0.52	-1.0
92,874	-		GFF6032	0.52	-1.0
92,876	+		GFF6032	0.52	-1.5
92,876	+		GFF6032	0.52	+1.6
92,876	+		GFF6032	0.52	+0.8
92,876	+		GFF6032	0.52	-0.4
92,876	+		GFF6032	0.52	-1.2
92,877	-		GFF6032	0.53	-2.0
92,877	-		GFF6032	0.53	-0.6
92,879	+		GFF6032	0.53	-2.7
92,879	+		GFF6032	0.53	-1.0
92,879	+		GFF6032	0.53	-3.1
92,880	-		GFF6032	0.53	-1.8
92,880	-		GFF6032	0.53	-0.5
92,880	-		GFF6032	0.53	-2.5
92,880	-		GFF6032	0.53	+0.7
93,065	+		GFF6032	0.68	+0.2
93,066	-		GFF6032	0.68	+0.2
93,240	-		GFF6032	0.83	-1.2
93,240	-		GFF6032	0.83	-0.9
93,266	+		GFF6032	0.85	-1.3
93,266	+		GFF6032	0.85	-2.9
93,266	+		GFF6032	0.85	-1.4
93,266	+		GFF6032	0.85	-1.2
93,266	+		GFF6032	0.85	-0.6
93,266	+		GFF6032	0.85	-2.2
93,266	+		GFF6032	0.85	-0.6
93,266	+		GFF6032	0.85	-2.0
93,267	-		GFF6032	0.85	-1.6
93,267	-		GFF6032	0.85	-1.3
93,267	-		GFF6032	0.85	-0.4
93,267	-		GFF6032	0.85	+0.6
93,290	+		GFF6032	0.87	-3.3
93,329	+		GFF6032	0.90	-1.5
93,329	+		GFF6032	0.90	-2.2
93,330	-				+1.2
93,330	-				-1.6
93,330	-				-1.5
93,422	+				-0.9
93,422	+				-3.3
93,422	+				+0.4
93,423	-				-1.0
93,423	-				-0.5
93,423	-				-0.8
93,462	+				-0.2
93,552	+				-0.4
93,552	+				-1.3
93,552	+				-1.7
93,552	+				-1.6
93,553	-				+0.2
93,553	-				-1.2
93,733	-		GFF6033	0.29	-2.0
93,744	+		GFF6033	0.30	-3.0
93,744	+		GFF6033	0.30	-1.5
93,744	+		GFF6033	0.30	-1.3
93,744	+		GFF6033	0.30	-1.8
93,744	+		GFF6033	0.30	-0.4
93,745	-		GFF6033	0.31	-1.0
93,745	-		GFF6033	0.31	+0.6
93,745	-		GFF6033	0.31	-2.3
93,745	-		GFF6033	0.31	-4.4
93,745	-		GFF6033	0.31	-0.6
93,745	-		GFF6033	0.31	-3.1
93,745	-		GFF6033	0.31	-0.8
93,745	-		GFF6033	0.31	-2.8
93,882	+		GFF6033	0.45	-2.8
93,882	+		GFF6033	0.45	-0.4
93,883	-		GFF6033	0.45	-1.4
93,883	-		GFF6033	0.45	-3.0
93,883	-		GFF6033	0.45	+0.2
93,883	-		GFF6033	0.45	-1.2
94,003	-		GFF6033	0.58	-1.7
94,265	+		GFF6033	0.86	-1.4
94,265	+		GFF6033	0.86	-2.8
94,265	+		GFF6033	0.86	+0.2
94,265	+		GFF6033	0.86	-3.6
94,266	-		GFF6033	0.87	-3.6
94,266	-		GFF6033	0.87	+0.1
94,266	-		GFF6033	0.87	-1.3
94,305	+				-2.4
94,306	-				+0.6
94,317	+				-2.2
94,318	-				+2.3
94,328	+				-2.2
94,329	-				-1.5
94,338	+				+0.4
94,338	+				-0.6
94,338	+				+2.1
94,338	+				+1.2
94,338	+				-2.5
94,338	+				-0.8
94,339	-				-0.2
94,339	-				-0.2
94,339	-				-2.0
94,339	-				-0.8
94,339	-				+0.9
94,339	-				+0.2
94,390	+				-0.0
94,390	+				-0.7
94,390	+				-2.6
94,391	-				+0.3
94,391	-				-1.8
94,391	-				-0.8
94,391	-				-1.7
94,391	-				-1.4
94,391	-				+0.2
94,402	+				+0.2
94,402	+				-0.6
94,402	+				-2.2
94,402	+				+0.2
94,402	+				-0.5
94,403	-				+0.3
94,403	-				+1.4
94,403	-				-0.2
94,403	-				+1.0
94,403	-				-0.5
94,468	+				-1.3
94,520	+				-0.1
94,520	+				+0.3
94,520	+				-2.2
94,521	-				-3.3
94,521	-				-0.7
94,583	+				-1.7
94,583	+				+2.6
94,583	+				-0.2
94,583	+				-1.0
94,583	+				+0.5
94,583	+				-0.8
94,583	+				-2.1
94,583	+				+0.5
94,583	+				+0.4
94,584	-				-0.8
94,584	-				-1.8
94,584	-				+1.0
94,584	-				-1.3
94,584	-				-1.7
94,584	-				+0.6
94,584	-				-0.8
94,584	-				-0.7
94,584	-				-1.5
94,629	+				-2.4
94,629	+				-1.5
94,630	-				-0.4
94,630	-				+0.5
94,630	-				+1.6
94,630	-				-1.4
94,717	-				-1.5
94,717	-				+1.0
94,792	-		GFF6034	0.12	-0.3
94,798	-		GFF6034	0.13	-0.9
94,809	+		GFF6034	0.14	-0.3
94,809	+		GFF6034	0.14	+0.2
94,905	+		GFF6034	0.21	+0.2
94,905	+		GFF6034	0.21	-0.6
94,905	+		GFF6034	0.21	-1.8
94,905	+		GFF6034	0.21	+2.5
94,905	+		GFF6034	0.21	-0.4
94,905	+		GFF6034	0.21	-4.1
94,906	-		GFF6034	0.21	-1.9
94,906	-		GFF6034	0.21	-1.4
94,906	-		GFF6034	0.21	-1.8
94,906	-		GFF6034	0.21	-1.4
94,906	-		GFF6034	0.21	-0.8
94,906	-		GFF6034	0.21	+0.7
94,914	+		GFF6034	0.22	-1.5
94,915	-		GFF6034	0.22	-0.8
94,915	-		GFF6034	0.22	-1.2
94,915	-		GFF6034	0.22	-3.9
94,947	+		GFF6034	0.24	-0.2
94,947	+		GFF6034	0.24	+1.9
94,947	+		GFF6034	0.24	+1.2
94,947	+		GFF6034	0.24	+0.9
94,947	+		GFF6034	0.24	-1.0
94,947	+		GFF6034	0.24	+0.6
94,947	+		GFF6034	0.24	-2.1
94,947	+		GFF6034	0.24	-0.3
94,948	-		GFF6034	0.25	-1.3
94,948	-		GFF6034	0.25	-0.4
94,948	-		GFF6034	0.25	+0.8
94,948	-		GFF6034	0.25	-1.3
94,948	-		GFF6034	0.25	-2.2
95,001	+		GFF6034	0.29	+0.8
95,001	+		GFF6034	0.29	-0.4
95,001	+		GFF6034	0.29	-2.7
95,001	+		GFF6034	0.29	-2.1
95,002	-		GFF6034	0.29	-2.7
95,002	-		GFF6034	0.29	-1.3
95,002	-		GFF6034	0.29	-1.4
95,075	+		GFF6034	0.34	-0.5
95,075	+		GFF6034	0.34	+0.6
95,075	+		GFF6034	0.34	+0.7
95,076	-		GFF6034	0.34	-1.3
95,076	-		GFF6034	0.34	+0.9
95,076	-		GFF6034	0.34	-0.2
95,076	-		GFF6034	0.34	+1.0
95,076	-		GFF6034	0.34	-1.7
95,094	+		GFF6034	0.36	-0.6
95,094	+		GFF6034	0.36	+2.0
95,094	+		GFF6034	0.36	-0.5
95,095	-		GFF6034	0.36	+0.9
95,095	-		GFF6034	0.36	-1.6
95,136	+		GFF6034	0.39	-0.5
95,136	+		GFF6034	0.39	+2.2
95,173	+		GFF6034	0.42	-1.7
95,173	+		GFF6034	0.42	-0.6
95,173	+		GFF6034	0.42	-2.3
95,174	-		GFF6034	0.42	+1.0
95,174	-		GFF6034	0.42	+0.1
95,196	+		GFF6034	0.44	+0.4
95,196	+		GFF6034	0.44	+0.6
95,196	+		GFF6034	0.44	+2.2
95,197	-		GFF6034	0.44	-1.5
95,197	-		GFF6034	0.44	-0.5
95,349	+		GFF6034	0.56	-0.8
95,349	+		GFF6034	0.56	+0.9