Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6014 and GFF6015 are separated by 13 nucleotides GFF6015 and GFF6016 are separated by 85 nucleotides GFF6016 and GFF6017 are separated by 125 nucleotides GFF6017 and GFF6018 overlap by 4 nucleotides
GFF6014 - Transcriptional regulator, LysR family, at 74,338 to 75,225
GFF6014
GFF6015 - Transcriptional regulator PA0877, LysR family, at 75,239 to 76,129
GFF6015
GFF6016 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 76,215 to 77,144
GFF6016
GFF6017 - NADPH-dependent 7-cyano-7-deazaguanine reductase (EC 1.7.1.13), at 77,270 to 78,136
GFF6017
GFF6018 - Hydrolase, alpha/beta fold family functionally coupled to Phosphoribulokinase, at 78,133 to 79,035
GFF6018
Position (kb) 76
77
78 Strain fitness (log2 ratio) -2
-1
0
1
2 at 75.804 kb on + strand, within GFF6015 at 75.804 kb on + strand, within GFF6015 at 75.805 kb on - strand, within GFF6015 at 76.086 kb on + strand at 76.086 kb on + strand at 76.087 kb on - strand at 76.432 kb on + strand, within GFF6016 at 76.433 kb on - strand, within GFF6016 at 76.636 kb on + strand, within GFF6016 at 76.637 kb on - strand, within GFF6016 at 76.637 kb on - strand, within GFF6016 at 76.687 kb on - strand, within GFF6016 at 76.687 kb on - strand, within GFF6016 at 76.741 kb on + strand, within GFF6016 at 76.742 kb on - strand, within GFF6016 at 76.742 kb on - strand, within GFF6016 at 76.742 kb on - strand, within GFF6016 at 76.742 kb on - strand, within GFF6016 at 76.744 kb on + strand, within GFF6016 at 76.744 kb on + strand, within GFF6016 at 76.744 kb on + strand, within GFF6016 at 76.745 kb on - strand, within GFF6016 at 76.753 kb on + strand, within GFF6016 at 77.358 kb on + strand, within GFF6017 at 77.359 kb on - strand, within GFF6017 at 77.359 kb on - strand, within GFF6017 at 77.367 kb on + strand, within GFF6017 at 77.367 kb on + strand, within GFF6017 at 77.368 kb on - strand, within GFF6017 at 77.368 kb on - strand, within GFF6017 at 77.469 kb on + strand, within GFF6017 at 77.469 kb on + strand, within GFF6017 at 77.469 kb on + strand, within GFF6017 at 77.470 kb on - strand, within GFF6017 at 77.470 kb on - strand, within GFF6017 at 77.470 kb on - strand, within GFF6017 at 77.508 kb on + strand, within GFF6017 at 77.640 kb on + strand, within GFF6017 at 77.851 kb on - strand, within GFF6017 at 78.063 kb on + strand at 78.076 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 75,804 + GFF6015 0.63 -0.9 75,804 + GFF6015 0.63 +0.6 75,805 - GFF6015 0.64 -0.4 76,086 + -0.6 76,086 + -2.6 76,087 - +0.6 76,432 + GFF6016 0.23 -2.4 76,433 - GFF6016 0.23 +1.4 76,636 + GFF6016 0.45 -1.0 76,637 - GFF6016 0.45 +1.2 76,637 - GFF6016 0.45 -0.9 76,687 - GFF6016 0.51 -2.0 76,687 - GFF6016 0.51 -0.2 76,741 + GFF6016 0.57 +0.3 76,742 - GFF6016 0.57 +0.2 76,742 - GFF6016 0.57 +0.9 76,742 - GFF6016 0.57 -0.8 76,742 - GFF6016 0.57 -1.0 76,744 + GFF6016 0.57 +2.0 76,744 + GFF6016 0.57 +1.7 76,744 + GFF6016 0.57 +1.6 76,745 - GFF6016 0.57 +1.2 76,753 + GFF6016 0.58 +0.4 77,358 + GFF6017 0.10 +2.2 77,359 - GFF6017 0.10 -0.6 77,359 - GFF6017 0.10 -0.4 77,367 + GFF6017 0.11 +0.5 77,367 + GFF6017 0.11 -1.2 77,368 - GFF6017 0.11 -2.6 77,368 - GFF6017 0.11 -2.3 77,469 + GFF6017 0.23 +2.2 77,469 + GFF6017 0.23 +2.7 77,469 + GFF6017 0.23 -0.8 77,470 - GFF6017 0.23 -1.2 77,470 - GFF6017 0.23 -0.3 77,470 - GFF6017 0.23 -1.7 77,508 + GFF6017 0.27 -0.8 77,640 + GFF6017 0.43 -1.3 77,851 - GFF6017 0.67 -1.4 78,063 + -2.6 78,076 - +2.0
Or see this region's nucleotide sequence