Strain Fitness in Variovorax sp. SCN45 around GFF60

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF58 and GFF59 overlap by 4 nucleotidesGFF59 and GFF60 are separated by 66 nucleotidesGFF60 and GFF61 overlap by 8 nucleotides GFF58 - Tyrosine-protein kinase (EC 2.7.10.2), at 72,966 to 75,230 GFF58 GFF59 - Undecaprenyl-phosphate galactosephosphotransferase (EC 2.7.8.6), at 75,227 to 75,928 GFF59 GFF60 - GDP-L-fucose synthetase (EC 1.1.1.271), at 75,995 to 76,942 GFF60 GFF61 - GDP-mannose 4,6-dehydratase (EC 4.2.1.47), at 76,935 to 78,059 GFF61 Position (kb) 75 76 77Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 75.121 kb on - strandat 75.127 kb on - strandat 75.136 kb on - strandat 75.294 kb on - strandat 75.390 kb on - strand, within GFF59at 75.399 kb on + strand, within GFF59at 75.440 kb on + strand, within GFF59at 75.441 kb on - strand, within GFF59at 75.441 kb on - strand, within GFF59at 75.441 kb on - strand, within GFF59at 75.441 kb on - strand, within GFF59at 75.441 kb on - strand, within GFF59at 75.441 kb on - strand, within GFF59at 75.441 kb on - strand, within GFF59at 75.441 kb on - strand, within GFF59at 75.575 kb on + strand, within GFF59at 75.576 kb on - strand, within GFF59at 75.632 kb on + strand, within GFF59at 75.633 kb on - strand, within GFF59at 75.633 kb on - strand, within GFF59at 75.633 kb on - strand, within GFF59at 75.633 kb on - strand, within GFF59at 75.728 kb on + strand, within GFF59at 75.737 kb on + strand, within GFF59at 75.738 kb on - strand, within GFF59at 75.738 kb on - strand, within GFF59at 75.750 kb on - strand, within GFF59at 75.812 kb on + strand, within GFF59at 75.813 kb on - strand, within GFF59at 75.843 kb on - strand, within GFF59at 75.843 kb on - strand, within GFF59at 75.965 kb on - strandat 76.130 kb on + strand, within GFF60at 76.130 kb on + strand, within GFF60at 76.130 kb on + strand, within GFF60at 76.131 kb on - strand, within GFF60at 76.131 kb on - strand, within GFF60at 76.175 kb on + strand, within GFF60at 76.176 kb on - strand, within GFF60at 76.193 kb on + strand, within GFF60at 76.194 kb on - strand, within GFF60at 76.283 kb on + strand, within GFF60at 76.283 kb on + strand, within GFF60at 76.283 kb on + strand, within GFF60at 76.283 kb on + strand, within GFF60at 76.284 kb on - strand, within GFF60at 76.358 kb on + strand, within GFF60at 76.359 kb on - strand, within GFF60at 76.400 kb on + strand, within GFF60at 76.400 kb on + strand, within GFF60at 76.400 kb on + strand, within GFF60at 76.436 kb on + strand, within GFF60at 76.437 kb on - strand, within GFF60at 76.464 kb on - strand, within GFF60at 76.481 kb on + strand, within GFF60at 76.481 kb on + strand, within GFF60at 76.482 kb on - strand, within GFF60at 76.482 kb on - strand, within GFF60at 76.482 kb on - strand, within GFF60at 76.601 kb on + strand, within GFF60at 76.601 kb on + strand, within GFF60at 76.659 kb on - strand, within GFF60at 76.983 kb on + strandat 76.984 kb on - strandat 76.984 kb on - strandat 76.984 kb on - strandat 77.077 kb on - strand, within GFF61at 77.187 kb on + strand, within GFF61at 77.188 kb on - strand, within GFF61at 77.322 kb on + strand, within GFF61at 77.323 kb on - strand, within GFF61at 77.323 kb on - strand, within GFF61at 77.347 kb on - strand, within GFF61at 77.392 kb on - strand, within GFF61at 77.424 kb on + strand, within GFF61at 77.424 kb on + strand, within GFF61at 77.448 kb on + strand, within GFF61at 77.449 kb on - strand, within GFF61at 77.460 kb on + strand, within GFF61at 77.461 kb on - strand, within GFF61at 77.461 kb on - strand, within GFF61at 77.461 kb on - strand, within GFF61at 77.469 kb on + strand, within GFF61at 77.470 kb on - strand, within GFF61at 77.634 kb on + strand, within GFF61at 77.634 kb on + strand, within GFF61at 77.682 kb on + strand, within GFF61at 77.683 kb on - strand, within GFF61at 77.683 kb on - strand, within GFF61at 77.706 kb on + strand, within GFF61

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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75,121 - +1.1
75,127 - -1.4
75,136 - -3.6
75,294 - -1.6
75,390 - GFF59 0.23 -3.2
75,399 + GFF59 0.25 -0.5
75,440 + GFF59 0.30 -1.0
75,441 - GFF59 0.30 -2.6
75,441 - GFF59 0.30 -3.2
75,441 - GFF59 0.30 +0.4
75,441 - GFF59 0.30 +0.1
75,441 - GFF59 0.30 -0.8
75,441 - GFF59 0.30 -1.1
75,441 - GFF59 0.30 +0.9
75,441 - GFF59 0.30 -1.6
75,575 + GFF59 0.50 -0.8
75,576 - GFF59 0.50 +1.0
75,632 + GFF59 0.58 -1.8
75,633 - GFF59 0.58 +3.0
75,633 - GFF59 0.58 -0.3
75,633 - GFF59 0.58 +0.7
75,633 - GFF59 0.58 -1.7
75,728 + GFF59 0.71 -0.2
75,737 + GFF59 0.73 +1.2
75,738 - GFF59 0.73 +0.8
75,738 - GFF59 0.73 +0.1
75,750 - GFF59 0.75 -1.1
75,812 + GFF59 0.83 -0.2
75,813 - GFF59 0.83 +2.0
75,843 - GFF59 0.88 -2.6
75,843 - GFF59 0.88 -2.0
75,965 - -0.6
76,130 + GFF60 0.14 +2.2
76,130 + GFF60 0.14 -0.2
76,130 + GFF60 0.14 -1.2
76,131 - GFF60 0.14 +0.7
76,131 - GFF60 0.14 -3.6
76,175 + GFF60 0.19 -1.6
76,176 - GFF60 0.19 -0.8
76,193 + GFF60 0.21 -1.8
76,194 - GFF60 0.21 +1.0
76,283 + GFF60 0.30 -0.8
76,283 + GFF60 0.30 +1.6
76,283 + GFF60 0.30 -2.9
76,283 + GFF60 0.30 -1.3
76,284 - GFF60 0.30 -1.2
76,358 + GFF60 0.38 -0.1
76,359 - GFF60 0.38 +0.8
76,400 + GFF60 0.43 +0.2
76,400 + GFF60 0.43 +2.1
76,400 + GFF60 0.43 +0.8
76,436 + GFF60 0.47 -3.0
76,437 - GFF60 0.47 -1.4
76,464 - GFF60 0.49 +1.3
76,481 + GFF60 0.51 -2.5
76,481 + GFF60 0.51 -1.1
76,482 - GFF60 0.51 -3.3
76,482 - GFF60 0.51 -2.4
76,482 - GFF60 0.51 -1.2
76,601 + GFF60 0.64 +0.6
76,601 + GFF60 0.64 -0.9
76,659 - GFF60 0.70 +0.2
76,983 + -2.0
76,984 - -2.1
76,984 - -1.2
76,984 - -1.1
77,077 - GFF61 0.13 -1.2
77,187 + GFF61 0.22 -0.2
77,188 - GFF61 0.22 +1.8
77,322 + GFF61 0.34 -2.4
77,323 - GFF61 0.34 -0.5
77,323 - GFF61 0.34 -1.1
77,347 - GFF61 0.37 -3.3
77,392 - GFF61 0.41 -1.8
77,424 + GFF61 0.43 +0.6
77,424 + GFF61 0.43 -1.3
77,448 + GFF61 0.46 -3.4
77,449 - GFF61 0.46 -1.6
77,460 + GFF61 0.47 -2.0
77,461 - GFF61 0.47 -0.6
77,461 - GFF61 0.47 -2.2
77,461 - GFF61 0.47 +1.2
77,469 + GFF61 0.47 -2.6
77,470 - GFF61 0.48 -1.1
77,634 + GFF61 0.62 +0.2
77,634 + GFF61 0.62 -3.1
77,682 + GFF61 0.66 +0.1
77,683 - GFF61 0.66 +0.5
77,683 - GFF61 0.66 -1.3
77,706 + GFF61 0.69 -2.2

Or see this region's nucleotide sequence