Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5618 and GFF5619 are separated by 93 nucleotides GFF5619 and GFF5620 are separated by 63 nucleotides
GFF5618 - ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 241,247 to 242,059
GFF5618
GFF5619 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 242,153 to 243,484
GFF5619
GFF5620 - ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 243,548 to 244,612
GFF5620
Position (kb) 242
243
244 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 241.276 kb on - strand at 241.276 kb on - strand at 241.276 kb on - strand at 241.276 kb on - strand at 241.405 kb on - strand, within GFF5618 at 241.405 kb on - strand, within GFF5618 at 241.410 kb on + strand, within GFF5618 at 241.410 kb on + strand, within GFF5618 at 241.411 kb on - strand, within GFF5618 at 241.620 kb on + strand, within GFF5618 at 241.621 kb on - strand, within GFF5618 at 241.668 kb on + strand, within GFF5618 at 241.668 kb on + strand, within GFF5618 at 241.668 kb on + strand, within GFF5618 at 241.668 kb on + strand, within GFF5618 at 241.668 kb on + strand, within GFF5618 at 241.669 kb on - strand, within GFF5618 at 241.669 kb on - strand, within GFF5618 at 241.669 kb on - strand, within GFF5618 at 241.669 kb on - strand, within GFF5618 at 241.669 kb on - strand, within GFF5618 at 242.010 kb on + strand at 242.010 kb on + strand at 242.010 kb on + strand at 242.010 kb on + strand at 242.010 kb on + strand at 242.011 kb on - strand at 242.011 kb on - strand at 242.011 kb on - strand at 242.011 kb on - strand at 242.011 kb on - strand at 242.205 kb on + strand at 242.205 kb on + strand at 242.206 kb on - strand at 242.206 kb on - strand at 242.523 kb on + strand, within GFF5619 at 242.644 kb on - strand, within GFF5619 at 242.644 kb on - strand, within GFF5619 at 242.706 kb on + strand, within GFF5619 at 242.706 kb on + strand, within GFF5619 at 242.706 kb on + strand, within GFF5619 at 242.707 kb on - strand, within GFF5619 at 242.707 kb on - strand, within GFF5619 at 242.940 kb on + strand, within GFF5619 at 242.941 kb on - strand, within GFF5619 at 243.031 kb on - strand, within GFF5619 at 243.309 kb on + strand, within GFF5619 at 243.310 kb on - strand, within GFF5619 at 243.310 kb on - strand, within GFF5619 at 243.366 kb on + strand at 243.366 kb on + strand at 243.933 kb on + strand, within GFF5620 at 243.933 kb on + strand, within GFF5620 at 243.934 kb on - strand, within GFF5620 at 244.068 kb on + strand, within GFF5620 at 244.069 kb on - strand, within GFF5620 at 244.069 kb on - strand, within GFF5620 at 244.218 kb on + strand, within GFF5620 at 244.219 kb on - strand, within GFF5620 at 244.338 kb on + strand, within GFF5620 at 244.339 kb on - strand, within GFF5620 at 244.339 kb on - strand, within GFF5620 at 244.398 kb on + strand, within GFF5620 at 244.473 kb on + strand, within GFF5620
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 241,276 - -2.0 241,276 - -1.3 241,276 - +0.3 241,276 - +0.1 241,405 - GFF5618 0.19 -0.4 241,405 - GFF5618 0.19 -2.1 241,410 + GFF5618 0.20 +0.7 241,410 + GFF5618 0.20 -1.5 241,411 - GFF5618 0.20 +2.2 241,620 + GFF5618 0.46 -2.9 241,621 - GFF5618 0.46 +1.2 241,668 + GFF5618 0.52 +0.4 241,668 + GFF5618 0.52 -1.7 241,668 + GFF5618 0.52 -1.2 241,668 + GFF5618 0.52 +0.7 241,668 + GFF5618 0.52 -0.6 241,669 - GFF5618 0.52 -2.3 241,669 - GFF5618 0.52 +0.6 241,669 - GFF5618 0.52 -0.8 241,669 - GFF5618 0.52 -2.0 241,669 - GFF5618 0.52 -0.5 242,010 + +3.0 242,010 + +0.3 242,010 + -0.7 242,010 + -1.6 242,010 + -1.6 242,011 - +1.0 242,011 - -0.8 242,011 - -2.3 242,011 - -1.4 242,011 - -0.5 242,205 + -0.5 242,205 + -0.1 242,206 - +0.1 242,206 - -2.3 242,523 + GFF5619 0.28 -1.7 242,644 - GFF5619 0.37 -0.3 242,644 - GFF5619 0.37 +0.0 242,706 + GFF5619 0.42 -0.6 242,706 + GFF5619 0.42 -1.9 242,706 + GFF5619 0.42 -1.8 242,707 - GFF5619 0.42 -2.0 242,707 - GFF5619 0.42 +0.8 242,940 + GFF5619 0.59 -0.2 242,941 - GFF5619 0.59 +0.3 243,031 - GFF5619 0.66 +2.2 243,309 + GFF5619 0.87 -1.0 243,310 - GFF5619 0.87 -1.6 243,310 - GFF5619 0.87 -2.7 243,366 + +0.0 243,366 + -0.4 243,933 + GFF5620 0.36 +0.4 243,933 + GFF5620 0.36 -2.1 243,934 - GFF5620 0.36 -1.5 244,068 + GFF5620 0.49 -0.6 244,069 - GFF5620 0.49 -0.7 244,069 - GFF5620 0.49 +0.3 244,218 + GFF5620 0.63 -2.6 244,219 - GFF5620 0.63 -0.8 244,338 + GFF5620 0.74 +0.0 244,339 - GFF5620 0.74 -2.6 244,339 - GFF5620 0.74 +1.0 244,398 + GFF5620 0.80 -2.1 244,473 + GFF5620 0.87 +1.6
Or see this region's nucleotide sequence