Strain Fitness in Variovorax sp. SCN45 around GFF5513

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
142,627	+		GFF5511	0.84	-0.8
142,627	+		GFF5511	0.84	-3.5
142,628	-		GFF5511	0.85	-1.0
142,628	-		GFF5511	0.85	-0.2
142,793	+				+2.7
142,793	+				+3.6
142,794	-				-0.8
142,831	+				-2.5
142,831	+				-0.6
142,831	+				-1.0
142,831	+				-0.2
142,831	+				-3.6
142,832	-				-0.7
142,832	-				-2.2
142,832	-				-1.6
142,832	-				-2.1
142,832	-				-3.2
142,832	-				-1.8
142,832	-				-3.2
142,956	+		GFF5512	0.27	-2.1
142,957	-		GFF5512	0.27	-4.5
143,109	+		GFF5512	0.55	-1.2
143,109	+		GFF5512	0.55	-4.1
143,109	+		GFF5512	0.55	-3.1
143,109	+		GFF5512	0.55	-1.0
143,109	+		GFF5512	0.55	-4.2
143,109	+		GFF5512	0.55	-5.0
143,109	+		GFF5512	0.55	-4.3
143,109	+		GFF5512	0.55	-3.2
143,110	-		GFF5512	0.55	-1.3
143,110	-		GFF5512	0.55	-2.0
143,459	+				-2.9
143,459	+				-1.8
143,534	+		GFF5513	0.15	-1.6
143,534	+		GFF5513	0.15	-1.2
144,107	+		GFF5513	0.63	-3.1
144,107	+		GFF5513	0.63	-2.4
144,107	+		GFF5513	0.63	-3.1
144,107	+		GFF5513	0.63	-2.7
144,107	+		GFF5513	0.63	-2.8
144,200	+		GFF5513	0.71	-3.5
144,200	+		GFF5513	0.71	-2.0
144,404	+		GFF5513	0.88	-2.5
144,404	+		GFF5513	0.88	-3.4
144,404	+		GFF5513	0.88	-0.8
144,405	-		GFF5513	0.88	-3.7