Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5368 and GFF5369 are separated by 124 nucleotides GFF5369 and GFF5370 are separated by 59 nucleotides
GFF5368 - 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262), at 241,278 to 242,321
GFF5368
GFF5369 - Large-conductance mechanosensitive channel, at 242,446 to 242,874
GFF5369
GFF5370 - TPR domain protein, putative component of TonB system, at 242,934 to 245,423
GFF5370
Position (kb) 242
243 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 242.447 kb on + strand at 242.448 kb on - strand at 242.482 kb on + strand at 242.702 kb on + strand, within GFF5369 at 242.703 kb on - strand, within GFF5369 at 242.703 kb on - strand, within GFF5369 at 242.703 kb on - strand, within GFF5369 at 242.703 kb on - strand, within GFF5369 at 242.703 kb on - strand, within GFF5369 at 242.703 kb on - strand, within GFF5369 at 242.919 kb on + strand at 242.919 kb on + strand at 242.919 kb on + strand at 242.919 kb on + strand at 243.055 kb on + strand at 243.056 kb on - strand at 243.127 kb on + strand at 243.148 kb on + strand at 243.149 kb on - strand at 243.149 kb on - strand at 243.149 kb on - strand at 243.149 kb on - strand at 243.149 kb on - strand at 243.149 kb on - strand at 243.295 kb on + strand, within GFF5370 at 243.296 kb on - strand, within GFF5370 at 243.296 kb on - strand, within GFF5370 at 243.456 kb on + strand, within GFF5370 at 243.456 kb on + strand, within GFF5370 at 243.456 kb on + strand, within GFF5370 at 243.456 kb on + strand, within GFF5370 at 243.457 kb on - strand, within GFF5370 at 243.457 kb on - strand, within GFF5370 at 243.457 kb on - strand, within GFF5370 at 243.457 kb on - strand, within GFF5370 at 243.457 kb on - strand, within GFF5370 at 243.457 kb on - strand, within GFF5370 at 243.457 kb on - strand, within GFF5370 at 243.661 kb on + strand, within GFF5370 at 243.661 kb on + strand, within GFF5370 at 243.662 kb on - strand, within GFF5370 at 243.662 kb on - strand, within GFF5370 at 243.709 kb on + strand, within GFF5370 at 243.709 kb on + strand, within GFF5370 at 243.709 kb on + strand, within GFF5370 at 243.710 kb on - strand, within GFF5370 at 243.715 kb on + strand, within GFF5370 at 243.715 kb on + strand, within GFF5370 at 243.715 kb on + strand, within GFF5370 at 243.716 kb on - strand, within GFF5370 at 243.716 kb on - strand, within GFF5370 at 243.722 kb on + strand, within GFF5370 at 243.722 kb on + strand, within GFF5370 at 243.722 kb on + strand, within GFF5370 at 243.723 kb on - strand, within GFF5370 at 243.723 kb on - strand, within GFF5370 at 243.723 kb on - strand, within GFF5370 at 243.743 kb on - strand, within GFF5370 at 243.778 kb on + strand, within GFF5370 at 243.778 kb on + strand, within GFF5370 at 243.778 kb on + strand, within GFF5370
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 242,447 + -0.5 242,448 - -0.4 242,482 + +0.0 242,702 + GFF5369 0.60 -1.4 242,703 - GFF5369 0.60 +0.8 242,703 - GFF5369 0.60 +3.3 242,703 - GFF5369 0.60 -0.5 242,703 - GFF5369 0.60 +1.6 242,703 - GFF5369 0.60 +1.3 242,703 - GFF5369 0.60 -0.2 242,919 + -1.5 242,919 + -0.4 242,919 + -1.0 242,919 + +0.3 243,055 + +0.6 243,056 - -1.4 243,127 + +1.2 243,148 + -1.8 243,149 - +0.8 243,149 - -3.7 243,149 - -1.9 243,149 - +0.1 243,149 - +1.0 243,149 - +1.8 243,295 + GFF5370 0.14 +0.2 243,296 - GFF5370 0.15 +0.9 243,296 - GFF5370 0.15 -1.0 243,456 + GFF5370 0.21 -1.0 243,456 + GFF5370 0.21 -1.7 243,456 + GFF5370 0.21 -1.9 243,456 + GFF5370 0.21 -3.0 243,457 - GFF5370 0.21 -2.1 243,457 - GFF5370 0.21 -1.2 243,457 - GFF5370 0.21 -0.0 243,457 - GFF5370 0.21 +0.7 243,457 - GFF5370 0.21 +2.2 243,457 - GFF5370 0.21 +1.3 243,457 - GFF5370 0.21 +1.8 243,661 + GFF5370 0.29 +2.3 243,661 + GFF5370 0.29 -1.0 243,662 - GFF5370 0.29 +0.7 243,662 - GFF5370 0.29 -0.2 243,709 + GFF5370 0.31 +1.3 243,709 + GFF5370 0.31 -1.1 243,709 + GFF5370 0.31 -0.3 243,710 - GFF5370 0.31 -1.7 243,715 + GFF5370 0.31 +1.0 243,715 + GFF5370 0.31 +1.0 243,715 + GFF5370 0.31 -2.1 243,716 - GFF5370 0.31 +2.2 243,716 - GFF5370 0.31 -1.0 243,722 + GFF5370 0.32 +1.0 243,722 + GFF5370 0.32 +1.8 243,722 + GFF5370 0.32 -0.4 243,723 - GFF5370 0.32 +0.1 243,723 - GFF5370 0.32 -0.8 243,723 - GFF5370 0.32 -0.0 243,743 - GFF5370 0.32 +0.9 243,778 + GFF5370 0.34 +0.8 243,778 + GFF5370 0.34 -0.5 243,778 + GFF5370 0.34 -0.5
Or see this region's nucleotide sequence