Strain Fitness in Variovorax sp. SCN45 around GFF5262

Experiment: Community=Locust bean gum; Passage=4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF5261 and GFF5262 are separated by 144 nucleotidesGFF5262 and GFF5263 are separated by 0 nucleotides GFF5261 - Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49), at 126,360 to 127,832 GFF5261 GFF5262 - Ferric iron ABC transporter, iron-binding protein, at 127,977 to 128,990 GFF5262 GFF5263 - Ferric iron ABC transporter, permease protein, at 128,991 to 131,264 GFF5263 Position (kb) 127 128 129Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 126.985 kb on + strand, within GFF5261at 126.985 kb on + strand, within GFF5261at 126.985 kb on + strand, within GFF5261at 126.985 kb on + strand, within GFF5261at 126.985 kb on + strand, within GFF5261at 126.986 kb on - strand, within GFF5261at 127.171 kb on + strand, within GFF5261at 127.172 kb on - strand, within GFF5261at 127.172 kb on - strand, within GFF5261at 127.172 kb on - strand, within GFF5261at 127.172 kb on - strand, within GFF5261at 127.315 kb on + strand, within GFF5261at 127.315 kb on + strand, within GFF5261at 127.316 kb on - strand, within GFF5261at 127.501 kb on + strand, within GFF5261at 127.501 kb on + strand, within GFF5261at 127.501 kb on + strand, within GFF5261at 127.501 kb on + strand, within GFF5261at 127.501 kb on + strand, within GFF5261at 127.501 kb on + strand, within GFF5261at 127.501 kb on + strand, within GFF5261at 127.501 kb on + strand, within GFF5261at 127.501 kb on + strand, within GFF5261at 127.501 kb on + strand, within GFF5261at 127.501 kb on + strand, within GFF5261at 127.501 kb on + strand, within GFF5261at 127.501 kb on - strand, within GFF5261at 127.502 kb on - strand, within GFF5261at 127.502 kb on - strand, within GFF5261at 127.556 kb on - strand, within GFF5261at 127.588 kb on + strand, within GFF5261at 127.588 kb on + strand, within GFF5261at 127.589 kb on - strand, within GFF5261at 127.889 kb on + strandat 127.889 kb on + strandat 127.890 kb on - strandat 127.890 kb on - strandat 127.890 kb on - strandat 127.890 kb on - strandat 127.896 kb on - strandat 127.914 kb on + strandat 127.914 kb on + strandat 127.914 kb on + strandat 127.915 kb on - strandat 127.915 kb on - strandat 127.915 kb on - strandat 127.915 kb on - strandat 127.917 kb on + strandat 127.917 kb on + strandat 127.917 kb on + strandat 127.917 kb on + strandat 127.917 kb on + strandat 127.917 kb on + strandat 127.917 kb on + strandat 127.918 kb on - strandat 127.918 kb on - strandat 127.918 kb on - strandat 127.918 kb on - strandat 127.918 kb on - strandat 127.924 kb on - strandat 127.924 kb on - strandat 128.097 kb on + strand, within GFF5262at 128.097 kb on + strand, within GFF5262at 128.098 kb on - strand, within GFF5262at 128.098 kb on - strand, within GFF5262at 128.105 kb on + strand, within GFF5262at 128.106 kb on - strand, within GFF5262at 128.259 kb on + strand, within GFF5262at 128.259 kb on + strand, within GFF5262at 128.259 kb on + strand, within GFF5262at 128.259 kb on + strand, within GFF5262at 128.259 kb on + strand, within GFF5262at 128.259 kb on + strand, within GFF5262at 128.259 kb on + strand, within GFF5262at 128.259 kb on + strand, within GFF5262at 128.259 kb on + strand, within GFF5262at 128.260 kb on - strand, within GFF5262at 128.260 kb on - strand, within GFF5262at 128.260 kb on - strand, within GFF5262at 128.260 kb on - strand, within GFF5262at 128.322 kb on + strand, within GFF5262at 128.322 kb on + strand, within GFF5262at 128.322 kb on + strand, within GFF5262at 128.323 kb on - strand, within GFF5262at 128.323 kb on - strand, within GFF5262at 128.340 kb on + strand, within GFF5262at 128.340 kb on + strand, within GFF5262at 128.341 kb on - strand, within GFF5262at 128.364 kb on + strand, within GFF5262at 128.364 kb on + strand, within GFF5262at 128.364 kb on + strand, within GFF5262at 128.364 kb on + strand, within GFF5262at 128.364 kb on + strand, within GFF5262at 128.364 kb on + strand, within GFF5262at 128.365 kb on - strand, within GFF5262at 128.365 kb on - strand, within GFF5262at 128.365 kb on - strand, within GFF5262at 128.365 kb on - strand, within GFF5262at 128.365 kb on - strand, within GFF5262at 128.436 kb on + strand, within GFF5262at 128.437 kb on - strand, within GFF5262at 128.437 kb on - strand, within GFF5262at 128.484 kb on + strand, within GFF5262at 128.484 kb on + strand, within GFF5262at 128.484 kb on + strand, within GFF5262at 128.484 kb on + strand, within GFF5262at 128.485 kb on - strand, within GFF5262at 128.485 kb on - strand, within GFF5262at 128.485 kb on - strand, within GFF5262at 128.485 kb on - strand, within GFF5262at 128.538 kb on + strand, within GFF5262at 128.538 kb on + strand, within GFF5262at 128.571 kb on + strand, within GFF5262at 128.571 kb on + strand, within GFF5262at 128.571 kb on + strand, within GFF5262at 128.572 kb on - strand, within GFF5262at 128.572 kb on - strand, within GFF5262at 128.775 kb on + strand, within GFF5262at 128.775 kb on + strand, within GFF5262at 128.776 kb on - strand, within GFF5262at 128.776 kb on - strand, within GFF5262at 128.904 kb on + strandat 128.904 kb on + strandat 128.904 kb on + strandat 128.905 kb on - strandat 128.905 kb on - strandat 128.905 kb on - strandat 128.910 kb on + strandat 128.911 kb on - strandat 128.911 kb on - strandat 128.919 kb on + strandat 128.919 kb on + strandat 128.919 kb on + strandat 128.920 kb on - strandat 128.988 kb on + strandat 128.988 kb on + strandat 128.989 kb on - strandat 128.989 kb on - strandat 129.099 kb on + strandat 129.100 kb on - strandat 129.100 kb on - strandat 129.117 kb on + strandat 129.118 kb on - strandat 129.118 kb on - strandat 129.142 kb on - strandat 129.225 kb on + strand, within GFF5263at 129.954 kb on + strand, within GFF5263at 129.954 kb on + strand, within GFF5263at 129.954 kb on + strand, within GFF5263at 129.954 kb on + strand, within GFF5263at 129.955 kb on - strand, within GFF5263at 129.955 kb on - strand, within GFF5263at 129.955 kb on - strand, within GFF5263

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
remove
126,985 + GFF5261 0.42 +0.9
126,985 + GFF5261 0.42 +0.8
126,985 + GFF5261 0.42 +0.2
126,985 + GFF5261 0.42 -0.1
126,985 + GFF5261 0.42 -2.8
126,986 - GFF5261 0.42 +0.0
127,171 + GFF5261 0.55 -0.2
127,172 - GFF5261 0.55 -1.1
127,172 - GFF5261 0.55 -2.1
127,172 - GFF5261 0.55 -2.2
127,172 - GFF5261 0.55 -0.2
127,315 + GFF5261 0.65 +0.8
127,315 + GFF5261 0.65 -2.9
127,316 - GFF5261 0.65 -1.4
127,501 + GFF5261 0.77 -1.5
127,501 + GFF5261 0.77 -1.8
127,501 + GFF5261 0.77 +0.8
127,501 + GFF5261 0.77 +1.3
127,501 + GFF5261 0.77 -1.2
127,501 + GFF5261 0.77 +1.1
127,501 + GFF5261 0.77 -2.1
127,501 + GFF5261 0.77 -1.2
127,501 + GFF5261 0.77 -1.0
127,501 + GFF5261 0.77 -0.5
127,501 + GFF5261 0.77 -1.8
127,501 + GFF5261 0.77 -1.7
127,501 - GFF5261 0.77 -2.9
127,502 - GFF5261 0.78 +4.3
127,502 - GFF5261 0.78 +0.3
127,556 - GFF5261 0.81 -0.9
127,588 + GFF5261 0.83 +2.2
127,588 + GFF5261 0.83 -1.0
127,589 - GFF5261 0.83 +0.8
127,889 + -0.4
127,889 + +0.3
127,890 - +0.3
127,890 - -2.7
127,890 - -0.8
127,890 - +0.0
127,896 - -0.5
127,914 + -1.7
127,914 + -1.7
127,914 + +1.2
127,915 - -1.6
127,915 - -1.2
127,915 - -2.7
127,915 - +2.3
127,917 + +0.1
127,917 + -1.0
127,917 + +1.3
127,917 + +1.2
127,917 + +2.9
127,917 + -0.9
127,917 + -1.1
127,918 - -1.2
127,918 - -0.8
127,918 - +2.8
127,918 - -0.8
127,918 - -0.9
127,924 - +0.1
127,924 - +0.8
128,097 + GFF5262 0.12 +0.8
128,097 + GFF5262 0.12 -1.8
128,098 - GFF5262 0.12 -1.8
128,098 - GFF5262 0.12 -2.3
128,105 + GFF5262 0.13 -0.3
128,106 - GFF5262 0.13 -2.7
128,259 + GFF5262 0.28 +0.4
128,259 + GFF5262 0.28 -0.6
128,259 + GFF5262 0.28 +0.5
128,259 + GFF5262 0.28 -0.7
128,259 + GFF5262 0.28 -0.2
128,259 + GFF5262 0.28 +2.3
128,259 + GFF5262 0.28 -0.7
128,259 + GFF5262 0.28 -0.2
128,259 + GFF5262 0.28 +0.3
128,260 - GFF5262 0.28 -0.8
128,260 - GFF5262 0.28 +0.5
128,260 - GFF5262 0.28 -0.9
128,260 - GFF5262 0.28 -1.4
128,322 + GFF5262 0.34 +0.0
128,322 + GFF5262 0.34 -0.5
128,322 + GFF5262 0.34 -0.2
128,323 - GFF5262 0.34 +0.0
128,323 - GFF5262 0.34 -2.9
128,340 + GFF5262 0.36 +2.7
128,340 + GFF5262 0.36 +2.3
128,341 - GFF5262 0.36 -0.7
128,364 + GFF5262 0.38 +0.8
128,364 + GFF5262 0.38 +0.8
128,364 + GFF5262 0.38 +2.4
128,364 + GFF5262 0.38 +0.8
128,364 + GFF5262 0.38 +1.5
128,364 + GFF5262 0.38 -2.3
128,365 - GFF5262 0.38 -0.5
128,365 - GFF5262 0.38 -0.0
128,365 - GFF5262 0.38 +1.3
128,365 - GFF5262 0.38 -1.2
128,365 - GFF5262 0.38 -0.8
128,436 + GFF5262 0.45 +0.0
128,437 - GFF5262 0.45 -2.2
128,437 - GFF5262 0.45 +1.8
128,484 + GFF5262 0.50 +1.3
128,484 + GFF5262 0.50 +3.0
128,484 + GFF5262 0.50 +0.5
128,484 + GFF5262 0.50 +1.1
128,485 - GFF5262 0.50 +0.8
128,485 - GFF5262 0.50 -0.6
128,485 - GFF5262 0.50 +1.1
128,485 - GFF5262 0.50 -0.3
128,538 + GFF5262 0.55 -0.5
128,538 + GFF5262 0.55 +2.7
128,571 + GFF5262 0.59 -2.1
128,571 + GFF5262 0.59 -2.3
128,571 + GFF5262 0.59 -0.2
128,572 - GFF5262 0.59 -1.2
128,572 - GFF5262 0.59 +1.4
128,775 + GFF5262 0.79 +0.5
128,775 + GFF5262 0.79 +0.8
128,776 - GFF5262 0.79 -2.4
128,776 - GFF5262 0.79 -0.9
128,904 + +0.8
128,904 + -1.3
128,904 + -2.9
128,905 - -1.7
128,905 - +0.4
128,905 - +0.4
128,910 + -3.0
128,911 - +0.3
128,911 - +1.0
128,919 + -0.8
128,919 + -1.4
128,919 + +2.1
128,920 - -1.7
128,988 + -1.8
128,988 + -2.1
128,989 - -0.7
128,989 - +0.4
129,099 + -0.9
129,100 - -1.1
129,100 - +1.7
129,117 + +0.7
129,118 - +0.0
129,118 - +1.6
129,142 - -1.4
129,225 + GFF5263 0.10 -2.1
129,954 + GFF5263 0.42 -1.7
129,954 + GFF5263 0.42 -1.0
129,954 + GFF5263 0.42 +0.0
129,954 + GFF5263 0.42 +0.4
129,955 - GFF5263 0.42 -2.7
129,955 - GFF5263 0.42 +0.0
129,955 - GFF5263 0.42 +0.3

Or see this region's nucleotide sequence