Strain Fitness in Variovorax sp. SCN45 around GFF5241

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
105,618	+				+1.7
105,618	+				+1.3
105,619	-				-1.6
105,667	+		GFF5240	0.13	-1.1
105,668	-		GFF5240	0.13	+0.8
105,668	-		GFF5240	0.13	-1.7
105,668	-		GFF5240	0.13	+0.0
105,668	-		GFF5240	0.13	-1.9
105,895	+		GFF5240	0.37	-1.2
105,895	+		GFF5240	0.37	+0.5
105,895	+		GFF5240	0.37	-2.1
105,895	+		GFF5240	0.37	-0.8
105,895	+		GFF5240	0.37	+0.9
105,896	-		GFF5240	0.37	+0.9
105,896	-		GFF5240	0.37	-0.8
107,105	+		GFF5241	0.85	+0.5
107,105	+		GFF5241	0.85	+0.2
107,105	+		GFF5241	0.85	+0.9
107,106	-		GFF5241	0.86	-1.2
107,210	+				+1.3
107,210	+				+2.1
107,211	-				-2.7
107,211	-				-0.7
107,680	+		GFF5243	0.16	+1.8
107,680	+		GFF5243	0.16	-2.3
107,681	-		GFF5243	0.16	+0.4
108,182	+		GFF5244	0.21	-0.3
108,182	+		GFF5244	0.21	-0.4
108,182	+		GFF5244	0.21	-1.2
108,182	+		GFF5244	0.21	-1.2
108,182	+		GFF5244	0.21	+1.3
108,182	+		GFF5244	0.21	-0.2
108,182	+		GFF5244	0.21	+0.7
108,183	-		GFF5244	0.21	-1.5
108,183	-		GFF5244	0.21	-0.9
108,183	-		GFF5244	0.21	-0.5
108,183	-		GFF5244	0.21	-0.7
108,183	-		GFF5244	0.21	+0.5
108,183	-		GFF5244	0.21	-1.7
108,183	-		GFF5244	0.21	+0.3
108,188	+		GFF5244	0.22	+0.8
108,189	-		GFF5244	0.22	+0.8
108,189	-		GFF5244	0.22	+0.6