Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF518 and GFF519 are separated by 145 nucleotides GFF519 and GFF520 overlap by 4 nucleotides GFF520 and GFF521 overlap by 4 nucleotides
GFF518 - Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains, at 556,972 to 558,504
GFF518
GFF519 - Transcriptional regulator, AcrR family, at 558,650 to 559,345
GFF519
GFF520 - Efflux transport system, outer membrane factor (OMF) lipoprotein, at 559,342 to 560,868
GFF520
GFF521 - Secretion protein HlyD precursor, at 560,865 to 562,001
GFF521
Position (kb) 559
560
561 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 558.364 kb on + strand at 558.364 kb on + strand at 558.364 kb on + strand at 558.364 kb on + strand at 558.365 kb on - strand at 558.365 kb on - strand at 558.515 kb on + strand at 558.516 kb on - strand at 558.516 kb on - strand at 558.582 kb on - strand at 558.606 kb on - strand at 558.606 kb on - strand at 558.606 kb on - strand at 558.639 kb on + strand at 558.639 kb on + strand at 558.827 kb on + strand, within GFF519 at 558.828 kb on - strand, within GFF519 at 558.828 kb on - strand, within GFF519 at 558.828 kb on - strand, within GFF519 at 558.830 kb on + strand, within GFF519 at 558.830 kb on + strand, within GFF519 at 558.830 kb on + strand, within GFF519 at 558.830 kb on + strand, within GFF519 at 558.830 kb on + strand, within GFF519 at 558.831 kb on - strand, within GFF519 at 558.831 kb on - strand, within GFF519 at 558.831 kb on - strand, within GFF519 at 558.831 kb on - strand, within GFF519 at 558.855 kb on - strand, within GFF519 at 558.949 kb on + strand, within GFF519 at 558.949 kb on + strand, within GFF519 at 558.950 kb on - strand, within GFF519 at 558.950 kb on - strand, within GFF519 at 558.950 kb on - strand, within GFF519 at 558.950 kb on - strand, within GFF519 at 558.950 kb on - strand, within GFF519 at 559.190 kb on + strand, within GFF519 at 559.191 kb on - strand, within GFF519 at 559.191 kb on - strand, within GFF519 at 559.191 kb on - strand, within GFF519 at 559.191 kb on - strand, within GFF519 at 559.191 kb on - strand, within GFF519 at 559.191 kb on - strand, within GFF519 at 559.191 kb on - strand, within GFF519 at 559.734 kb on + strand, within GFF520 at 559.734 kb on + strand, within GFF520 at 559.734 kb on + strand, within GFF520 at 559.734 kb on + strand, within GFF520 at 559.735 kb on - strand, within GFF520 at 559.735 kb on - strand, within GFF520 at 559.918 kb on + strand, within GFF520 at 559.918 kb on + strand, within GFF520 at 560.260 kb on + strand, within GFF520 at 560.261 kb on - strand, within GFF520 at 560.261 kb on - strand, within GFF520 at 560.261 kb on - strand, within GFF520 at 560.261 kb on - strand, within GFF520 at 560.261 kb on - strand, within GFF520 at 560.366 kb on - strand, within GFF520 at 560.485 kb on + strand, within GFF520 at 560.486 kb on - strand, within GFF520 at 560.486 kb on - strand, within GFF520 at 560.506 kb on + strand, within GFF520 at 560.507 kb on - strand, within GFF520 at 560.507 kb on - strand, within GFF520 at 560.507 kb on - strand, within GFF520 at 560.611 kb on + strand, within GFF520 at 560.611 kb on + strand, within GFF520 at 560.612 kb on - strand, within GFF520 at 560.612 kb on - strand, within GFF520 at 560.612 kb on - strand, within GFF520 at 560.612 kb on - strand, within GFF520 at 560.644 kb on + strand, within GFF520 at 560.645 kb on - strand, within GFF520 at 560.761 kb on + strand at 561.163 kb on + strand, within GFF521 at 561.163 kb on + strand, within GFF521 at 561.164 kb on - strand, within GFF521 at 561.164 kb on - strand, within GFF521 at 561.164 kb on - strand, within GFF521 at 561.324 kb on + strand, within GFF521 at 561.325 kb on - strand, within GFF521 at 561.325 kb on - strand, within GFF521 at 561.669 kb on + strand, within GFF521 at 561.669 kb on + strand, within GFF521 at 561.669 kb on + strand, within GFF521 at 561.669 kb on + strand, within GFF521 at 561.669 kb on + strand, within GFF521 at 561.669 kb on + strand, within GFF521 at 561.670 kb on - strand, within GFF521 at 561.670 kb on - strand, within GFF521 at 561.670 kb on - strand, within GFF521 at 561.670 kb on - strand, within GFF521 at 561.670 kb on - strand, within GFF521 at 561.670 kb on - strand, within GFF521 at 561.670 kb on - strand, within GFF521
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 558,364 + -0.3 558,364 + +0.2 558,364 + -0.3 558,364 + -1.7 558,365 - +1.0 558,365 - -1.9 558,515 + -1.8 558,516 - -2.5 558,516 - -2.1 558,582 - +0.3 558,606 - -2.5 558,606 - -0.5 558,606 - -0.8 558,639 + -1.4 558,639 + -0.1 558,827 + GFF519 0.25 -0.2 558,828 - GFF519 0.26 +1.8 558,828 - GFF519 0.26 -1.6 558,828 - GFF519 0.26 -0.3 558,830 + GFF519 0.26 +0.4 558,830 + GFF519 0.26 -3.8 558,830 + GFF519 0.26 +3.7 558,830 + GFF519 0.26 -0.4 558,830 + GFF519 0.26 -2.0 558,831 - GFF519 0.26 +0.1 558,831 - GFF519 0.26 -3.1 558,831 - GFF519 0.26 -0.5 558,831 - GFF519 0.26 -0.3 558,855 - GFF519 0.29 -0.7 558,949 + GFF519 0.43 -0.5 558,949 + GFF519 0.43 +0.3 558,950 - GFF519 0.43 -2.0 558,950 - GFF519 0.43 -1.3 558,950 - GFF519 0.43 +0.8 558,950 - GFF519 0.43 +2.7 558,950 - GFF519 0.43 +1.9 559,190 + GFF519 0.78 +0.4 559,191 - GFF519 0.78 -2.1 559,191 - GFF519 0.78 -1.6 559,191 - GFF519 0.78 -1.8 559,191 - GFF519 0.78 +0.1 559,191 - GFF519 0.78 -0.1 559,191 - GFF519 0.78 -0.5 559,191 - GFF519 0.78 -1.1 559,734 + GFF520 0.26 -0.5 559,734 + GFF520 0.26 +0.9 559,734 + GFF520 0.26 +1.6 559,734 + GFF520 0.26 +2.6 559,735 - GFF520 0.26 +1.6 559,735 - GFF520 0.26 -1.8 559,918 + GFF520 0.38 -2.9 559,918 + GFF520 0.38 +0.1 560,260 + GFF520 0.60 -0.1 560,261 - GFF520 0.60 -3.0 560,261 - GFF520 0.60 +1.2 560,261 - GFF520 0.60 -1.9 560,261 - GFF520 0.60 +0.1 560,261 - GFF520 0.60 +0.2 560,366 - GFF520 0.67 -2.8 560,485 + GFF520 0.75 +0.5 560,486 - GFF520 0.75 -0.9 560,486 - GFF520 0.75 -0.5 560,506 + GFF520 0.76 +1.9 560,507 - GFF520 0.76 -0.6 560,507 - GFF520 0.76 -2.3 560,507 - GFF520 0.76 +0.9 560,611 + GFF520 0.83 -1.3 560,611 + GFF520 0.83 -0.1 560,612 - GFF520 0.83 -0.5 560,612 - GFF520 0.83 +0.2 560,612 - GFF520 0.83 -1.3 560,612 - GFF520 0.83 -0.8 560,644 + GFF520 0.85 +0.1 560,645 - GFF520 0.85 -2.3 560,761 + -1.3 561,163 + GFF521 0.26 +1.1 561,163 + GFF521 0.26 -0.0 561,164 - GFF521 0.26 -1.1 561,164 - GFF521 0.26 -0.5 561,164 - GFF521 0.26 +0.6 561,324 + GFF521 0.40 -2.3 561,325 - GFF521 0.40 -2.1 561,325 - GFF521 0.40 -1.3 561,669 + GFF521 0.71 -2.7 561,669 + GFF521 0.71 +3.1 561,669 + GFF521 0.71 +0.0 561,669 + GFF521 0.71 -1.8 561,669 + GFF521 0.71 -0.5 561,669 + GFF521 0.71 -1.9 561,670 - GFF521 0.71 -0.9 561,670 - GFF521 0.71 -2.7 561,670 - GFF521 0.71 -0.1 561,670 - GFF521 0.71 +0.7 561,670 - GFF521 0.71 -1.3 561,670 - GFF521 0.71 -1.6 561,670 - GFF521 0.71 +2.0
Or see this region's nucleotide sequence