Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5043 and GFF5044 are separated by 4 nucleotides GFF5044 and GFF5045 are separated by 16 nucleotides GFF5045 and GFF5046 are separated by 18 nucleotides
GFF5043 - ABC transporter, permease protein (cluster 9, phospholipid), at 144,932 to 146,098
GFF5043
GFF5044 - ABC transporter, ATP-binding protein (cluster 9, phospholipid), at 146,103 to 146,948
GFF5044
GFF5045 - ABC transporter, substrate-binding protein (cluster 9, phospholipid), at 146,965 to 147,924
GFF5045
GFF5046 - putative lipoprotein, at 147,943 to 148,656
GFF5046
Position (kb) 146
147 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 145.259 kb on + strand, within GFF5043 at 145.259 kb on + strand, within GFF5043 at 145.259 kb on + strand, within GFF5043 at 145.259 kb on + strand, within GFF5043 at 145.259 kb on + strand, within GFF5043 at 145.259 kb on + strand, within GFF5043 at 145.259 kb on + strand, within GFF5043 at 145.259 kb on + strand, within GFF5043 at 145.259 kb on + strand, within GFF5043 at 145.260 kb on - strand, within GFF5043 at 145.260 kb on - strand, within GFF5043 at 145.260 kb on - strand, within GFF5043 at 145.260 kb on - strand, within GFF5043 at 145.260 kb on - strand, within GFF5043 at 145.260 kb on - strand, within GFF5043 at 145.451 kb on + strand, within GFF5043 at 145.452 kb on - strand, within GFF5043 at 145.452 kb on - strand, within GFF5043 at 145.452 kb on - strand, within GFF5043 at 145.497 kb on + strand, within GFF5043 at 145.498 kb on - strand, within GFF5043 at 145.498 kb on - strand, within GFF5043 at 145.520 kb on + strand, within GFF5043 at 145.521 kb on - strand, within GFF5043 at 145.521 kb on - strand, within GFF5043 at 145.521 kb on - strand, within GFF5043 at 145.521 kb on - strand, within GFF5043 at 145.716 kb on + strand, within GFF5043 at 145.716 kb on + strand, within GFF5043 at 145.843 kb on + strand, within GFF5043 at 145.843 kb on + strand, within GFF5043 at 145.843 kb on + strand, within GFF5043 at 145.843 kb on + strand, within GFF5043 at 145.843 kb on + strand, within GFF5043 at 145.843 kb on + strand, within GFF5043 at 145.844 kb on - strand, within GFF5043 at 145.844 kb on - strand, within GFF5043 at 145.856 kb on + strand, within GFF5043 at 145.888 kb on + strand, within GFF5043 at 145.888 kb on + strand, within GFF5043 at 145.888 kb on + strand, within GFF5043 at 145.888 kb on + strand, within GFF5043 at 145.889 kb on - strand, within GFF5043 at 145.889 kb on - strand, within GFF5043 at 145.889 kb on - strand, within GFF5043 at 145.958 kb on + strand, within GFF5043 at 145.958 kb on + strand, within GFF5043 at 145.958 kb on + strand, within GFF5043 at 145.958 kb on + strand, within GFF5043 at 145.959 kb on - strand, within GFF5043 at 145.959 kb on - strand, within GFF5043 at 145.959 kb on - strand, within GFF5043 at 145.959 kb on - strand, within GFF5043 at 145.959 kb on - strand, within GFF5043 at 145.959 kb on - strand, within GFF5043 at 146.029 kb on + strand at 146.029 kb on + strand at 146.030 kb on - strand at 146.030 kb on - strand at 146.030 kb on - strand at 146.030 kb on - strand at 146.847 kb on + strand, within GFF5044 at 146.847 kb on + strand, within GFF5044 at 146.847 kb on + strand, within GFF5044 at 146.847 kb on + strand, within GFF5044 at 146.848 kb on - strand, within GFF5044 at 146.848 kb on - strand, within GFF5044 at 146.953 kb on + strand at 146.953 kb on + strand at 146.953 kb on + strand at 146.953 kb on + strand at 146.953 kb on + strand at 146.953 kb on + strand at 146.954 kb on - strand at 146.954 kb on - strand at 146.957 kb on + strand at 146.957 kb on + strand at 146.957 kb on + strand at 146.957 kb on + strand at 146.957 kb on + strand at 146.958 kb on - strand at 146.958 kb on - strand at 146.958 kb on - strand at 146.958 kb on - strand at 146.958 kb on - strand at 146.958 kb on - strand at 146.958 kb on - strand at 146.958 kb on - strand at 146.958 kb on - strand at 146.969 kb on - strand at 147.076 kb on + strand, within GFF5045 at 147.262 kb on + strand, within GFF5045 at 147.262 kb on + strand, within GFF5045 at 147.262 kb on + strand, within GFF5045 at 147.262 kb on + strand, within GFF5045 at 147.263 kb on - strand, within GFF5045 at 147.263 kb on - strand, within GFF5045 at 147.263 kb on - strand, within GFF5045 at 147.263 kb on - strand, within GFF5045 at 147.737 kb on - strand, within GFF5045
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 145,259 + GFF5043 0.28 -2.6 145,259 + GFF5043 0.28 +1.5 145,259 + GFF5043 0.28 -0.9 145,259 + GFF5043 0.28 +1.5 145,259 + GFF5043 0.28 -3.1 145,259 + GFF5043 0.28 -2.8 145,259 + GFF5043 0.28 -0.6 145,259 + GFF5043 0.28 -1.5 145,259 + GFF5043 0.28 -2.1 145,260 - GFF5043 0.28 -1.6 145,260 - GFF5043 0.28 +0.2 145,260 - GFF5043 0.28 +1.5 145,260 - GFF5043 0.28 +0.4 145,260 - GFF5043 0.28 +0.1 145,260 - GFF5043 0.28 -0.6 145,451 + GFF5043 0.44 -2.6 145,452 - GFF5043 0.45 -0.7 145,452 - GFF5043 0.45 -2.6 145,452 - GFF5043 0.45 -0.5 145,497 + GFF5043 0.48 -4.2 145,498 - GFF5043 0.49 -1.0 145,498 - GFF5043 0.49 +0.1 145,520 + GFF5043 0.50 -0.3 145,521 - GFF5043 0.50 +0.7 145,521 - GFF5043 0.50 -2.4 145,521 - GFF5043 0.50 +1.1 145,521 - GFF5043 0.50 +1.6 145,716 + GFF5043 0.67 -0.3 145,716 + GFF5043 0.67 +0.5 145,843 + GFF5043 0.78 -2.2 145,843 + GFF5043 0.78 -1.3 145,843 + GFF5043 0.78 -0.7 145,843 + GFF5043 0.78 +0.9 145,843 + GFF5043 0.78 -1.5 145,843 + GFF5043 0.78 -2.0 145,844 - GFF5043 0.78 -0.8 145,844 - GFF5043 0.78 +0.0 145,856 + GFF5043 0.79 -2.0 145,888 + GFF5043 0.82 -0.6 145,888 + GFF5043 0.82 -0.1 145,888 + GFF5043 0.82 +0.9 145,888 + GFF5043 0.82 -0.8 145,889 - GFF5043 0.82 -2.2 145,889 - GFF5043 0.82 +2.5 145,889 - GFF5043 0.82 -1.7 145,958 + GFF5043 0.88 +0.6 145,958 + GFF5043 0.88 -0.9 145,958 + GFF5043 0.88 -1.3 145,958 + GFF5043 0.88 -0.6 145,959 - GFF5043 0.88 -2.2 145,959 - GFF5043 0.88 +0.2 145,959 - GFF5043 0.88 -0.1 145,959 - GFF5043 0.88 +1.2 145,959 - GFF5043 0.88 -1.2 145,959 - GFF5043 0.88 -0.7 146,029 + +0.7 146,029 + +1.0 146,030 - -2.1 146,030 - -1.6 146,030 - -2.2 146,030 - +1.0 146,847 + GFF5044 0.88 +1.2 146,847 + GFF5044 0.88 +0.9 146,847 + GFF5044 0.88 -2.2 146,847 + GFF5044 0.88 +2.5 146,848 - GFF5044 0.88 -0.9 146,848 - GFF5044 0.88 -0.1 146,953 + -0.7 146,953 + +0.7 146,953 + +2.3 146,953 + -0.4 146,953 + -1.2 146,953 + +0.2 146,954 - -0.6 146,954 - +1.4 146,957 + -2.1 146,957 + +0.9 146,957 + -1.6 146,957 + +1.4 146,957 + -1.3 146,958 - -1.3 146,958 - -0.8 146,958 - -1.2 146,958 - +0.3 146,958 - +0.2 146,958 - +1.7 146,958 - -0.3 146,958 - +0.9 146,958 - -0.3 146,969 - -1.6 147,076 + GFF5045 0.12 +1.1 147,262 + GFF5045 0.31 -1.0 147,262 + GFF5045 0.31 -0.6 147,262 + GFF5045 0.31 -2.1 147,262 + GFF5045 0.31 -1.2 147,263 - GFF5045 0.31 -0.7 147,263 - GFF5045 0.31 +0.8 147,263 - GFF5045 0.31 +1.7 147,263 - GFF5045 0.31 -0.9 147,737 - GFF5045 0.80 +1.1
Or see this region's nucleotide sequence