Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF488 and GFF489 are separated by 106 nucleotides GFF489 and GFF490 are separated by 115 nucleotides
GFF488 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 528,829 to 530,094
GFF488
GFF489 - ATP-dependent Clp protease proteolytic subunit ClpP (EC 3.4.21.92), at 530,201 to 530,809
GFF489
GFF490 - Cell division trigger factor (EC 5.2.1.8), at 530,925 to 532,241
GFF490
Position (kb) 530
531 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 529.541 kb on + strand, within GFF488 at 529.541 kb on + strand, within GFF488 at 529.541 kb on + strand, within GFF488 at 529.542 kb on - strand, within GFF488 at 529.542 kb on - strand, within GFF488 at 529.542 kb on - strand, within GFF488 at 529.542 kb on - strand, within GFF488 at 529.542 kb on - strand, within GFF488 at 529.574 kb on + strand, within GFF488 at 529.574 kb on + strand, within GFF488 at 529.574 kb on + strand, within GFF488 at 529.574 kb on + strand, within GFF488 at 529.575 kb on - strand, within GFF488 at 529.575 kb on - strand, within GFF488 at 529.575 kb on - strand, within GFF488 at 529.575 kb on - strand, within GFF488 at 529.575 kb on - strand, within GFF488 at 529.575 kb on - strand, within GFF488 at 529.575 kb on - strand, within GFF488 at 529.575 kb on - strand, within GFF488 at 529.628 kb on + strand, within GFF488 at 529.628 kb on + strand, within GFF488 at 529.629 kb on - strand, within GFF488 at 529.785 kb on - strand, within GFF488 at 529.805 kb on + strand, within GFF488 at 529.805 kb on + strand, within GFF488 at 529.805 kb on + strand, within GFF488 at 529.805 kb on + strand, within GFF488 at 529.805 kb on + strand, within GFF488 at 529.805 kb on + strand, within GFF488 at 529.805 kb on + strand, within GFF488 at 529.806 kb on - strand, within GFF488 at 529.806 kb on - strand, within GFF488 at 529.806 kb on - strand, within GFF488 at 529.806 kb on - strand, within GFF488 at 529.806 kb on - strand, within GFF488 at 529.814 kb on + strand, within GFF488 at 529.814 kb on + strand, within GFF488 at 529.814 kb on + strand, within GFF488 at 529.814 kb on + strand, within GFF488 at 529.815 kb on - strand, within GFF488 at 529.815 kb on - strand, within GFF488 at 529.862 kb on + strand, within GFF488 at 529.862 kb on + strand, within GFF488 at 529.862 kb on + strand, within GFF488 at 529.862 kb on + strand, within GFF488 at 529.862 kb on + strand, within GFF488 at 529.862 kb on + strand, within GFF488 at 529.862 kb on + strand, within GFF488 at 529.862 kb on + strand, within GFF488 at 529.862 kb on + strand, within GFF488 at 529.863 kb on - strand, within GFF488 at 529.863 kb on - strand, within GFF488 at 529.863 kb on - strand, within GFF488 at 529.863 kb on - strand, within GFF488 at 529.863 kb on - strand, within GFF488 at 529.863 kb on - strand, within GFF488 at 529.863 kb on - strand, within GFF488 at 529.863 kb on - strand, within GFF488 at 529.863 kb on - strand, within GFF488 at 530.054 kb on + strand at 530.054 kb on + strand at 530.054 kb on + strand at 530.054 kb on + strand at 530.054 kb on + strand at 530.054 kb on + strand at 530.054 kb on + strand at 530.054 kb on + strand at 530.054 kb on + strand at 530.054 kb on + strand at 530.055 kb on - strand at 530.055 kb on - strand at 530.055 kb on - strand at 530.055 kb on - strand at 530.117 kb on + strand at 530.129 kb on + strand at 530.129 kb on + strand at 530.129 kb on + strand at 530.129 kb on + strand at 530.129 kb on + strand at 530.129 kb on + strand at 530.129 kb on + strand at 530.129 kb on + strand at 530.129 kb on + strand at 530.129 kb on + strand at 530.130 kb on - strand at 530.130 kb on - strand at 530.130 kb on - strand at 530.130 kb on - strand at 530.130 kb on - strand at 530.130 kb on - strand at 530.130 kb on - strand at 530.130 kb on - strand at 530.130 kb on - strand at 530.130 kb on - strand at 530.130 kb on - strand at 530.130 kb on - strand at 530.130 kb on - strand at 530.130 kb on - strand at 530.130 kb on - strand at 530.130 kb on - strand at 530.130 kb on - strand at 530.130 kb on - strand at 530.130 kb on - strand at 530.133 kb on + strand at 530.133 kb on + strand at 530.133 kb on + strand at 530.134 kb on - strand at 530.134 kb on - strand at 530.134 kb on - strand at 530.238 kb on + strand at 530.269 kb on - strand, within GFF489 at 530.553 kb on + strand, within GFF489 at 530.553 kb on + strand, within GFF489 at 530.553 kb on + strand, within GFF489 at 530.553 kb on + strand, within GFF489 at 530.554 kb on - strand, within GFF489 at 530.554 kb on - strand, within GFF489 at 530.598 kb on + strand, within GFF489 at 530.599 kb on - strand, within GFF489 at 530.599 kb on - strand, within GFF489 at 530.599 kb on - strand, within GFF489 at 530.724 kb on + strand, within GFF489 at 530.724 kb on + strand, within GFF489 at 530.725 kb on - strand, within GFF489 at 530.725 kb on - strand, within GFF489 at 530.725 kb on - strand, within GFF489 at 530.733 kb on + strand, within GFF489 at 530.734 kb on - strand, within GFF489 at 530.734 kb on - strand, within GFF489 at 530.734 kb on - strand, within GFF489 at 530.813 kb on + strand at 530.813 kb on + strand at 530.813 kb on + strand at 530.813 kb on + strand at 530.813 kb on + strand at 530.813 kb on + strand at 530.813 kb on + strand at 530.813 kb on + strand at 530.813 kb on + strand at 530.813 kb on + strand at 530.814 kb on - strand at 530.814 kb on - strand at 530.814 kb on - strand at 530.814 kb on - strand at 530.814 kb on - strand at 530.814 kb on - strand at 530.814 kb on - strand at 530.814 kb on - strand at 530.814 kb on - strand at 530.814 kb on - strand at 530.814 kb on - strand at 530.814 kb on - strand at 530.814 kb on - strand at 530.814 kb on - strand at 530.814 kb on - strand at 530.814 kb on - strand at 530.814 kb on - strand at 530.814 kb on - strand at 530.855 kb on + strand at 530.855 kb on + strand at 530.855 kb on + strand at 530.855 kb on + strand at 530.855 kb on + strand at 530.856 kb on - strand at 530.856 kb on - strand at 530.856 kb on - strand at 530.906 kb on + strand at 531.064 kb on + strand, within GFF490 at 531.065 kb on - strand, within GFF490 at 531.065 kb on - strand, within GFF490 at 531.065 kb on - strand, within GFF490 at 531.065 kb on - strand, within GFF490 at 531.095 kb on - strand, within GFF490 at 531.095 kb on - strand, within GFF490 at 531.574 kb on + strand, within GFF490 at 531.574 kb on + strand, within GFF490 at 531.575 kb on - strand, within GFF490 at 531.575 kb on - strand, within GFF490 at 531.575 kb on - strand, within GFF490 at 531.794 kb on + strand, within GFF490 at 531.794 kb on + strand, within GFF490 at 531.794 kb on + strand, within GFF490 at 531.794 kb on + strand, within GFF490 at 531.794 kb on + strand, within GFF490 at 531.794 kb on + strand, within GFF490 at 531.795 kb on - strand, within GFF490 at 531.795 kb on - strand, within GFF490 at 531.795 kb on - strand, within GFF490 at 531.795 kb on - strand, within GFF490
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 529,541 + GFF488 0.56 -1.7 529,541 + GFF488 0.56 +0.8 529,541 + GFF488 0.56 -0.7 529,542 - GFF488 0.56 -1.2 529,542 - GFF488 0.56 -0.7 529,542 - GFF488 0.56 +0.3 529,542 - GFF488 0.56 -0.7 529,542 - GFF488 0.56 -0.7 529,574 + GFF488 0.59 -2.8 529,574 + GFF488 0.59 -2.2 529,574 + GFF488 0.59 -0.7 529,574 + GFF488 0.59 -0.3 529,575 - GFF488 0.59 +0.3 529,575 - GFF488 0.59 +0.3 529,575 - GFF488 0.59 -2.4 529,575 - GFF488 0.59 +1.8 529,575 - GFF488 0.59 -2.7 529,575 - GFF488 0.59 -0.2 529,575 - GFF488 0.59 -0.5 529,575 - GFF488 0.59 +1.4 529,628 + GFF488 0.63 -0.3 529,628 + GFF488 0.63 -0.2 529,629 - GFF488 0.63 -1.3 529,785 - GFF488 0.76 -0.2 529,805 + GFF488 0.77 -1.0 529,805 + GFF488 0.77 -0.7 529,805 + GFF488 0.77 -1.3 529,805 + GFF488 0.77 +0.3 529,805 + GFF488 0.77 -2.9 529,805 + GFF488 0.77 -1.2 529,805 + GFF488 0.77 -1.2 529,806 - GFF488 0.77 -0.7 529,806 - GFF488 0.77 -0.5 529,806 - GFF488 0.77 -0.2 529,806 - GFF488 0.77 -0.2 529,806 - GFF488 0.77 -1.5 529,814 + GFF488 0.78 -1.0 529,814 + GFF488 0.78 -0.6 529,814 + GFF488 0.78 -0.7 529,814 + GFF488 0.78 +0.3 529,815 - GFF488 0.78 -1.9 529,815 - GFF488 0.78 +0.8 529,862 + GFF488 0.82 -2.5 529,862 + GFF488 0.82 -2.2 529,862 + GFF488 0.82 -0.7 529,862 + GFF488 0.82 -1.5 529,862 + GFF488 0.82 -1.0 529,862 + GFF488 0.82 -0.7 529,862 + GFF488 0.82 -2.2 529,862 + GFF488 0.82 -3.1 529,862 + GFF488 0.82 -2.0 529,863 - GFF488 0.82 -2.3 529,863 - GFF488 0.82 -0.2 529,863 - GFF488 0.82 -0.2 529,863 - GFF488 0.82 -1.2 529,863 - GFF488 0.82 -2.5 529,863 - GFF488 0.82 -3.0 529,863 - GFF488 0.82 +0.8 529,863 - GFF488 0.82 -0.5 529,863 - GFF488 0.82 -0.6 530,054 + +0.3 530,054 + -1.5 530,054 + -1.7 530,054 + +1.0 530,054 + -1.9 530,054 + -1.2 530,054 + -3.2 530,054 + +0.3 530,054 + -0.2 530,054 + +0.8 530,055 - -0.5 530,055 - -1.0 530,055 - -4.2 530,055 - -1.6 530,117 + +0.8 530,129 + +0.4 530,129 + +2.5 530,129 + -0.4 530,129 + -0.2 530,129 + -0.6 530,129 + +0.4 530,129 + -0.5 530,129 + +0.6 530,129 + -0.6 530,129 + +0.0 530,130 - -0.3 530,130 - +1.1 530,130 - +1.0 530,130 - -1.2 530,130 - -2.5 530,130 - -1.4 530,130 - -1.8 530,130 - -0.2 530,130 - +1.5 530,130 - +0.6 530,130 - -1.5 530,130 - +0.8 530,130 - +1.7 530,130 - -1.0 530,130 - -2.2 530,130 - +0.7 530,130 - +0.6 530,130 - +0.6 530,130 - +0.8 530,133 + -2.9 530,133 + -1.9 530,133 + -0.9 530,134 - -0.2 530,134 - +1.3 530,134 - -0.5 530,238 + +0.3 530,269 - GFF489 0.11 +1.8 530,553 + GFF489 0.58 +1.8 530,553 + GFF489 0.58 -0.2 530,553 + GFF489 0.58 +1.8 530,553 + GFF489 0.58 +1.8 530,554 - GFF489 0.58 +0.3 530,554 - GFF489 0.58 +1.8 530,598 + GFF489 0.65 +1.8 530,599 - GFF489 0.65 +0.3 530,599 - GFF489 0.65 +1.8 530,599 - GFF489 0.65 +1.8 530,724 + GFF489 0.86 +1.8 530,724 + GFF489 0.86 +0.8 530,725 - GFF489 0.86 +1.8 530,725 - GFF489 0.86 +1.8 530,725 - GFF489 0.86 +1.8 530,733 + GFF489 0.87 +1.8 530,734 - GFF489 0.88 +0.8 530,734 - GFF489 0.88 -1.5 530,734 - GFF489 0.88 +0.3 530,813 + +0.3 530,813 + -0.2 530,813 + +0.8 530,813 + +1.8 530,813 + +0.8 530,813 + +0.8 530,813 + +0.3 530,813 + -0.7 530,813 + +1.8 530,813 + +1.8 530,814 - -1.0 530,814 - -1.6 530,814 - -1.3 530,814 - +2.7 530,814 - +1.8 530,814 - -2.1 530,814 - -1.0 530,814 - -0.5 530,814 - +0.3 530,814 - +1.8 530,814 - +1.8 530,814 - -0.2 530,814 - -0.5 530,814 - -0.7 530,814 - +0.3 530,814 - +1.8 530,814 - +0.8 530,814 - -0.7 530,855 + -1.3 530,855 + -2.6 530,855 + -1.3 530,855 + -2.1 530,855 + +0.4 530,856 - -2.2 530,856 - -1.0 530,856 - -2.5 530,906 + -0.1 531,064 + GFF490 0.11 +0.3 531,065 - GFF490 0.11 -2.2 531,065 - GFF490 0.11 -1.3 531,065 - GFF490 0.11 -0.7 531,065 - GFF490 0.11 +0.8 531,095 - GFF490 0.13 +0.6 531,095 - GFF490 0.13 -2.5 531,574 + GFF490 0.49 -1.2 531,574 + GFF490 0.49 -0.5 531,575 - GFF490 0.49 -0.2 531,575 - GFF490 0.49 -2.3 531,575 - GFF490 0.49 -0.0 531,794 + GFF490 0.66 -0.2 531,794 + GFF490 0.66 -2.8 531,794 + GFF490 0.66 +2.4 531,794 + GFF490 0.66 -2.2 531,794 + GFF490 0.66 +0.3 531,794 + GFF490 0.66 +4.7 531,795 - GFF490 0.66 -3.0 531,795 - GFF490 0.66 +0.4 531,795 - GFF490 0.66 -1.5 531,795 - GFF490 0.66 -0.2
Or see this region's nucleotide sequence