Strain Fitness in Variovorax sp. SCN45 around GFF486

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
524,791	+		GFF485	0.48	+1.0
524,791	+		GFF485	0.48	-0.3
524,791	+		GFF485	0.48	-2.4
524,791	+		GFF485	0.48	-0.4
524,791	+		GFF485	0.48	+1.8
524,792	-		GFF485	0.48	-1.4
524,792	-		GFF485	0.48	+1.8
524,792	-		GFF485	0.48	-1.0
524,792	-		GFF485	0.48	-1.6
524,792	-		GFF485	0.48	+0.0
524,792	-		GFF485	0.48	+2.0
524,890	+		GFF485	0.60	-1.6
524,890	+		GFF485	0.60	+0.3
524,890	+		GFF485	0.60	+1.2
524,890	+		GFF485	0.60	-1.6
524,890	+		GFF485	0.60	+2.2
524,890	+		GFF485	0.60	-0.1
524,890	+		GFF485	0.60	-2.4
524,890	+		GFF485	0.60	-0.4
524,890	+		GFF485	0.60	+1.8
524,890	+		GFF485	0.60	-2.2
524,891	-		GFF485	0.60	+2.6
524,891	-		GFF485	0.60	-1.5
524,891	-		GFF485	0.60	-1.5
524,891	-		GFF485	0.60	-2.2
524,891	-		GFF485	0.60	+0.6
525,148	+				-1.3
525,148	+				+0.8
525,148	+				-3.7
525,148	+				+0.1
525,148	+				-0.5
525,149	-				-1.0
525,149	-				-3.6
525,149	-				-1.2
525,149	-				+1.8
525,431	+		GFF486	0.31	-1.7
525,431	+		GFF486	0.31	-0.4
525,432	-		GFF486	0.31	-2.9
525,432	-		GFF486	0.31	-2.7
525,432	-		GFF486	0.31	+0.4
525,564	+		GFF486	0.52	+1.5
525,564	+		GFF486	0.52	+0.8
525,564	+		GFF486	0.52	-2.3
525,565	-		GFF486	0.52	-0.5
525,723	+		GFF486	0.76	-1.6
525,723	+		GFF486	0.76	-3.1
525,723	+		GFF486	0.76	-2.6
525,723	+		GFF486	0.76	-0.3
525,723	+		GFF486	0.76	-2.4
525,723	+		GFF486	0.76	+0.1
525,723	+		GFF486	0.76	+0.8
525,724	-		GFF486	0.76	-2.4
525,724	-		GFF486	0.76	-3.1
525,724	-		GFF486	0.76	+0.5
525,724	-		GFF486	0.76	-1.0
525,724	-		GFF486	0.76	-2.2
525,724	-		GFF486	0.76	-0.2
525,724	-		GFF486	0.76	-0.7
525,724	-		GFF486	0.76	+0.1
525,765	+		GFF486	0.83	-0.9
525,766	-		GFF486	0.83	-2.3
525,766	-		GFF486	0.83	-1.9
525,766	-		GFF486	0.83	+2.8
525,766	-		GFF486	0.83	-3.3
525,864	+				-2.4
525,864	+				-0.7
525,864	+				+0.7
525,864	+				+2.2
525,864	+				-0.7
525,864	+				-3.1
525,864	+				+1.6
525,864	+				-1.3
525,865	-				-1.3
525,865	-				-1.3
525,865	-				-1.6
525,865	-				+0.4
525,889	+				+0.6
525,889	+				+0.3
525,889	+				+0.5
525,889	+				-0.9
525,889	+				-0.6
525,890	-				+0.4
525,890	-				+2.1
525,890	-				-1.3
525,890	-				-0.7
525,890	-				-0.2
525,890	-				-1.3
526,008	-				-0.5
526,116	-				-0.2
526,318	-				-2.1
526,320	-				-0.7
526,326	-				+0.3
526,326	-				-0.9