Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4794 and GFF4795 overlap by 4 nucleotides GFF4795 and GFF4796 are separated by 116 nucleotides GFF4796 and GFF4797 are separated by 22 nucleotides GFF4797 and GFF4798 overlap by 4 nucleotides
GFF4794 - Ectoine hydroxylase (EC 1.17.-.-), at 164,528 to 165,403
GFF4794
GFF4795 - predicted biotin regulatory protein BioR (GntR family), at 165,400 to 166,107
GFF4795
GFF4796 - L-threo-3-hydroxyaspartate ammonia-lyase (EC 4.3.1.16), at 166,224 to 167,183
GFF4796
GFF4797 - ABC-type antimicrobial peptide transport system, ATPase component, at 167,206 to 167,856
GFF4797
GFF4798 - tRNA dimethylallyltransferase (EC 2.5.1.75), at 167,853 to 168,890
GFF4798
Position (kb) 166
167
168 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 165.289 kb on - strand, within GFF4794 at 165.289 kb on - strand, within GFF4794 at 165.289 kb on - strand, within GFF4794 at 165.357 kb on + strand at 165.357 kb on + strand at 165.357 kb on + strand at 165.358 kb on - strand at 165.686 kb on + strand, within GFF4795 at 165.686 kb on + strand, within GFF4795 at 165.686 kb on + strand, within GFF4795 at 165.686 kb on + strand, within GFF4795 at 165.686 kb on + strand, within GFF4795 at 165.686 kb on + strand, within GFF4795 at 165.687 kb on - strand, within GFF4795 at 165.687 kb on - strand, within GFF4795 at 165.687 kb on - strand, within GFF4795 at 165.687 kb on - strand, within GFF4795 at 165.845 kb on + strand, within GFF4795 at 165.846 kb on - strand, within GFF4795 at 166.052 kb on + strand at 166.135 kb on + strand at 166.163 kb on + strand at 166.164 kb on - strand at 166.164 kb on - strand at 166.231 kb on + strand at 166.231 kb on + strand at 166.231 kb on + strand at 166.231 kb on + strand at 166.231 kb on + strand at 166.231 kb on + strand at 166.231 kb on + strand at 166.231 kb on + strand at 166.231 kb on + strand at 166.232 kb on - strand at 166.232 kb on - strand at 166.232 kb on - strand at 166.232 kb on - strand at 166.232 kb on - strand at 166.232 kb on - strand at 166.232 kb on - strand at 166.232 kb on - strand at 166.232 kb on - strand at 166.232 kb on - strand at 166.232 kb on - strand at 166.232 kb on - strand at 166.232 kb on - strand at 166.232 kb on - strand at 166.235 kb on + strand at 166.235 kb on + strand at 166.235 kb on + strand at 166.235 kb on + strand at 166.235 kb on + strand at 166.235 kb on + strand at 166.236 kb on - strand at 166.236 kb on - strand at 166.236 kb on - strand at 166.236 kb on - strand at 166.236 kb on - strand at 166.239 kb on + strand at 166.239 kb on + strand at 166.239 kb on + strand at 166.239 kb on + strand at 166.240 kb on - strand at 166.240 kb on - strand at 166.240 kb on - strand at 166.240 kb on - strand at 166.240 kb on - strand at 166.567 kb on - strand, within GFF4796 at 166.567 kb on - strand, within GFF4796 at 166.587 kb on + strand, within GFF4796 at 166.587 kb on + strand, within GFF4796 at 166.587 kb on + strand, within GFF4796 at 166.587 kb on + strand, within GFF4796 at 166.587 kb on + strand, within GFF4796 at 166.588 kb on - strand, within GFF4796 at 166.588 kb on - strand, within GFF4796 at 166.666 kb on - strand, within GFF4796 at 166.666 kb on - strand, within GFF4796 at 166.666 kb on - strand, within GFF4796 at 166.824 kb on + strand, within GFF4796 at 166.825 kb on - strand, within GFF4796 at 166.944 kb on + strand, within GFF4796 at 166.944 kb on + strand, within GFF4796 at 166.944 kb on + strand, within GFF4796 at 166.944 kb on + strand, within GFF4796 at 166.945 kb on - strand, within GFF4796 at 166.945 kb on - strand, within GFF4796 at 166.945 kb on - strand, within GFF4796 at 166.945 kb on - strand, within GFF4796 at 166.945 kb on - strand, within GFF4796 at 167.822 kb on + strand at 167.822 kb on + strand at 167.905 kb on + strand at 167.906 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 165,289 - GFF4794 0.87 -0.1 165,289 - GFF4794 0.87 +2.0 165,289 - GFF4794 0.87 -1.6 165,357 + -0.3 165,357 + -1.2 165,357 + +0.4 165,358 - -2.8 165,686 + GFF4795 0.40 -1.4 165,686 + GFF4795 0.40 -2.4 165,686 + GFF4795 0.40 +1.0 165,686 + GFF4795 0.40 +0.8 165,686 + GFF4795 0.40 -1.3 165,686 + GFF4795 0.40 -0.2 165,687 - GFF4795 0.41 -1.0 165,687 - GFF4795 0.41 +1.1 165,687 - GFF4795 0.41 -1.0 165,687 - GFF4795 0.41 +1.3 165,845 + GFF4795 0.63 -2.7 165,846 - GFF4795 0.63 -0.2 166,052 + +0.3 166,135 + -3.5 166,163 + +3.0 166,164 - -0.1 166,164 - -1.7 166,231 + -0.2 166,231 + +0.8 166,231 + +0.2 166,231 + -0.8 166,231 + +0.1 166,231 + -4.0 166,231 + -0.4 166,231 + -0.4 166,231 + +0.6 166,232 - -1.9 166,232 - -2.1 166,232 - +1.2 166,232 - -1.7 166,232 - +1.7 166,232 - -1.0 166,232 - -1.0 166,232 - -0.7 166,232 - -0.4 166,232 - +0.1 166,232 - -1.1 166,232 - -2.3 166,232 - -1.7 166,232 - -1.6 166,235 + +1.6 166,235 + -2.1 166,235 + -3.0 166,235 + -1.9 166,235 + -0.9 166,235 + +0.1 166,236 - +0.4 166,236 - +0.0 166,236 - -0.6 166,236 - -0.8 166,236 - -2.6 166,239 + -3.7 166,239 + +4.2 166,239 + +0.2 166,239 + +0.2 166,240 - -2.4 166,240 - +1.5 166,240 - +0.0 166,240 - +0.2 166,240 - -1.7 166,567 - GFF4796 0.36 -2.8 166,567 - GFF4796 0.36 -0.8 166,587 + GFF4796 0.38 -1.9 166,587 + GFF4796 0.38 -1.9 166,587 + GFF4796 0.38 +1.3 166,587 + GFF4796 0.38 -1.4 166,587 + GFF4796 0.38 -1.0 166,588 - GFF4796 0.38 +0.4 166,588 - GFF4796 0.38 -1.4 166,666 - GFF4796 0.46 -2.8 166,666 - GFF4796 0.46 -0.7 166,666 - GFF4796 0.46 -1.3 166,824 + GFF4796 0.62 -0.3 166,825 - GFF4796 0.63 -1.3 166,944 + GFF4796 0.75 -0.5 166,944 + GFF4796 0.75 -0.3 166,944 + GFF4796 0.75 +1.7 166,944 + GFF4796 0.75 +1.4 166,945 - GFF4796 0.75 -0.4 166,945 - GFF4796 0.75 +1.1 166,945 - GFF4796 0.75 -2.2 166,945 - GFF4796 0.75 +1.3 166,945 - GFF4796 0.75 +0.0 167,822 + +1.6 167,822 + +2.2 167,905 + +0.0 167,906 - -3.4
Or see this region's nucleotide sequence