Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4787 and GFF4788 overlap by 4 nucleotides GFF4788 and GFF4789 are separated by 13 nucleotides GFF4789 and GFF4790 are separated by 87 nucleotides GFF4790 and GFF4791 are separated by 5 nucleotides
GFF4787 - ADP-ribosylglycohydrolase family protein, at 158,493 to 159,389
GFF4787
GFF4788 - Uncharacterized protein COG3236, at 159,386 to 159,949
GFF4788
GFF4789 - FIG01126746: hypothetical protein, at 159,963 to 160,580
GFF4789
GFF4790 - Nudix-related transcriptional regulator NrtR, at 160,668 to 161,393
GFF4790
GFF4791 - RNA polymerase ECF-type sigma factor, at 161,399 to 162,634
GFF4791
Position (kb) 159
160
161 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 158.974 kb on + strand, within GFF4787 at 158.975 kb on - strand, within GFF4787 at 158.975 kb on - strand, within GFF4787 at 158.975 kb on - strand, within GFF4787 at 159.130 kb on + strand, within GFF4787 at 159.130 kb on + strand, within GFF4787 at 159.130 kb on + strand, within GFF4787 at 159.130 kb on + strand, within GFF4787 at 159.131 kb on - strand, within GFF4787 at 159.131 kb on - strand, within GFF4787 at 159.154 kb on + strand, within GFF4787 at 159.216 kb on + strand, within GFF4787 at 159.217 kb on - strand, within GFF4787 at 159.217 kb on - strand, within GFF4787 at 159.373 kb on + strand at 159.374 kb on - strand at 159.783 kb on + strand, within GFF4788 at 159.882 kb on + strand, within GFF4788 at 159.882 kb on + strand, within GFF4788 at 160.231 kb on + strand, within GFF4789 at 160.348 kb on + strand, within GFF4789 at 160.348 kb on + strand, within GFF4789 at 160.349 kb on - strand, within GFF4789 at 160.349 kb on - strand, within GFF4789 at 160.435 kb on + strand, within GFF4789 at 160.435 kb on + strand, within GFF4789 at 160.466 kb on - strand, within GFF4789 at 160.611 kb on + strand at 160.612 kb on - strand at 160.617 kb on + strand at 160.618 kb on - strand at 160.630 kb on + strand at 160.630 kb on + strand at 160.630 kb on + strand at 160.630 kb on + strand at 160.630 kb on + strand at 160.631 kb on - strand at 160.631 kb on - strand at 160.631 kb on - strand at 160.631 kb on - strand at 160.631 kb on - strand at 160.633 kb on - strand at 160.636 kb on - strand at 160.918 kb on - strand, within GFF4790 at 160.989 kb on + strand, within GFF4790 at 160.989 kb on + strand, within GFF4790 at 160.989 kb on + strand, within GFF4790 at 160.989 kb on + strand, within GFF4790 at 160.990 kb on - strand, within GFF4790 at 160.990 kb on - strand, within GFF4790 at 160.990 kb on - strand, within GFF4790 at 161.148 kb on + strand, within GFF4790 at 161.148 kb on + strand, within GFF4790 at 161.148 kb on + strand, within GFF4790 at 161.148 kb on + strand, within GFF4790 at 161.149 kb on - strand, within GFF4790 at 161.149 kb on - strand, within GFF4790 at 161.211 kb on + strand, within GFF4790 at 161.211 kb on + strand, within GFF4790 at 161.211 kb on + strand, within GFF4790 at 161.211 kb on + strand, within GFF4790 at 161.211 kb on + strand, within GFF4790 at 161.212 kb on - strand, within GFF4790 at 161.212 kb on - strand, within GFF4790 at 161.212 kb on - strand, within GFF4790 at 161.212 kb on - strand, within GFF4790 at 161.391 kb on + strand at 161.391 kb on + strand at 161.391 kb on + strand at 161.392 kb on - strand at 161.392 kb on - strand at 161.427 kb on + strand at 161.427 kb on + strand at 161.428 kb on - strand at 161.473 kb on - strand at 161.544 kb on + strand, within GFF4791
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 158,974 + GFF4787 0.54 -2.6 158,975 - GFF4787 0.54 -2.7 158,975 - GFF4787 0.54 +0.0 158,975 - GFF4787 0.54 -2.0 159,130 + GFF4787 0.71 -1.1 159,130 + GFF4787 0.71 -0.6 159,130 + GFF4787 0.71 -1.1 159,130 + GFF4787 0.71 +1.0 159,131 - GFF4787 0.71 -0.2 159,131 - GFF4787 0.71 +2.0 159,154 + GFF4787 0.74 -1.8 159,216 + GFF4787 0.81 -0.8 159,217 - GFF4787 0.81 +0.4 159,217 - GFF4787 0.81 -2.2 159,373 + -1.7 159,374 - +2.6 159,783 + GFF4788 0.70 -0.8 159,882 + GFF4788 0.88 -0.2 159,882 + GFF4788 0.88 +0.7 160,231 + GFF4789 0.43 +0.2 160,348 + GFF4789 0.62 -2.5 160,348 + GFF4789 0.62 -1.0 160,349 - GFF4789 0.62 -1.0 160,349 - GFF4789 0.62 -1.6 160,435 + GFF4789 0.76 -0.0 160,435 + GFF4789 0.76 -0.3 160,466 - GFF4789 0.81 -0.8 160,611 + -0.3 160,612 - +0.4 160,617 + -2.4 160,618 - +0.4 160,630 + -2.1 160,630 + -1.4 160,630 + +1.0 160,630 + +0.8 160,630 + +0.4 160,631 - +0.4 160,631 - -0.3 160,631 - -1.9 160,631 - -0.6 160,631 - -1.6 160,633 - -3.0 160,636 - -2.3 160,918 - GFF4790 0.34 +0.2 160,989 + GFF4790 0.44 -3.3 160,989 + GFF4790 0.44 -1.9 160,989 + GFF4790 0.44 +4.7 160,989 + GFF4790 0.44 -1.4 160,990 - GFF4790 0.44 -1.3 160,990 - GFF4790 0.44 +0.0 160,990 - GFF4790 0.44 +0.6 161,148 + GFF4790 0.66 -2.6 161,148 + GFF4790 0.66 -1.6 161,148 + GFF4790 0.66 -0.6 161,148 + GFF4790 0.66 -2.0 161,149 - GFF4790 0.66 -1.8 161,149 - GFF4790 0.66 +1.0 161,211 + GFF4790 0.75 -2.1 161,211 + GFF4790 0.75 -0.3 161,211 + GFF4790 0.75 -3.0 161,211 + GFF4790 0.75 -0.6 161,211 + GFF4790 0.75 -1.3 161,212 - GFF4790 0.75 -1.1 161,212 - GFF4790 0.75 -1.1 161,212 - GFF4790 0.75 -0.3 161,212 - GFF4790 0.75 +0.0 161,391 + -2.7 161,391 + +1.4 161,391 + -0.8 161,392 - -0.5 161,392 - +0.4 161,427 + +0.4 161,427 + +0.1 161,428 - -1.3 161,473 - -0.3 161,544 + GFF4791 0.12 +1.1
Or see this region's nucleotide sequence