Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4763 and GFF4764 are separated by 15 nucleotides GFF4764 and GFF4765 are separated by 7 nucleotides GFF4765 and GFF4766 are separated by 7 nucleotides GFF4766 and GFF4767 are separated by 24 nucleotides
GFF4763 - NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3), at 130,397 to 131,884
GFF4763
GFF4764 - Putative transmembrane protein, at 131,900 to 132,205
GFF4764
GFF4765 - ADP-ribose pyrophosphatase (EC 3.6.1.13), at 132,213 to 132,830
GFF4765
GFF4766 - identified by similarity to GB:AAK22812.1; match to protein family HMM PF06676, at 132,838 to 133,302
GFF4766
GFF4767 - Efflux ABC transporter, permease/ATP-binding protein, at 133,327 to 135,087
GFF4767
Position (kb) 132
133 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 131.852 kb on + strand at 132.126 kb on - strand, within GFF4764 at 132.341 kb on + strand, within GFF4765 at 132.341 kb on + strand, within GFF4765 at 132.341 kb on + strand, within GFF4765 at 132.342 kb on - strand, within GFF4765 at 132.342 kb on - strand, within GFF4765 at 132.342 kb on - strand, within GFF4765 at 132.342 kb on - strand, within GFF4765 at 132.342 kb on - strand, within GFF4765 at 132.342 kb on - strand, within GFF4765 at 132.357 kb on + strand, within GFF4765 at 132.358 kb on - strand, within GFF4765 at 132.358 kb on - strand, within GFF4765 at 132.538 kb on - strand, within GFF4765 at 132.538 kb on - strand, within GFF4765 at 132.588 kb on + strand, within GFF4765 at 132.589 kb on - strand, within GFF4765 at 132.608 kb on + strand, within GFF4765 at 132.608 kb on + strand, within GFF4765 at 132.608 kb on + strand, within GFF4765 at 132.608 kb on + strand, within GFF4765 at 132.608 kb on + strand, within GFF4765 at 132.608 kb on + strand, within GFF4765 at 132.608 kb on + strand, within GFF4765 at 132.608 kb on + strand, within GFF4765 at 132.608 kb on + strand, within GFF4765 at 132.608 kb on + strand, within GFF4765 at 132.608 kb on + strand, within GFF4765 at 132.609 kb on - strand, within GFF4765 at 132.609 kb on - strand, within GFF4765 at 132.609 kb on - strand, within GFF4765 at 132.609 kb on - strand, within GFF4765 at 132.609 kb on - strand, within GFF4765 at 132.609 kb on - strand, within GFF4765 at 132.609 kb on - strand, within GFF4765 at 132.609 kb on - strand, within GFF4765 at 132.609 kb on - strand, within GFF4765 at 132.609 kb on - strand, within GFF4765 at 132.609 kb on - strand, within GFF4765 at 132.612 kb on + strand, within GFF4765 at 132.612 kb on + strand, within GFF4765 at 132.612 kb on + strand, within GFF4765 at 132.613 kb on - strand, within GFF4765 at 132.613 kb on - strand, within GFF4765 at 132.613 kb on - strand, within GFF4765 at 132.613 kb on - strand, within GFF4765 at 132.613 kb on - strand, within GFF4765 at 133.174 kb on + strand, within GFF4766 at 133.300 kb on + strand at 133.300 kb on + strand at 133.300 kb on + strand at 133.301 kb on - strand at 133.301 kb on - strand at 133.303 kb on + strand at 133.303 kb on + strand at 133.303 kb on + strand at 133.303 kb on + strand at 133.303 kb on + strand at 133.304 kb on - strand at 133.304 kb on - strand at 133.304 kb on - strand at 133.304 kb on - strand at 133.304 kb on - strand at 133.304 kb on - strand at 133.361 kb on + strand at 133.361 kb on + strand at 133.362 kb on - strand at 133.362 kb on - strand at 133.667 kb on + strand, within GFF4767 at 133.668 kb on - strand, within GFF4767 at 133.668 kb on - strand, within GFF4767
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 131,852 + -1.0 132,126 - GFF4764 0.74 +0.4 132,341 + GFF4765 0.21 -0.7 132,341 + GFF4765 0.21 +1.2 132,341 + GFF4765 0.21 +0.5 132,342 - GFF4765 0.21 -2.6 132,342 - GFF4765 0.21 +0.4 132,342 - GFF4765 0.21 -2.8 132,342 - GFF4765 0.21 -1.4 132,342 - GFF4765 0.21 +0.0 132,342 - GFF4765 0.21 +0.0 132,357 + GFF4765 0.23 -0.1 132,358 - GFF4765 0.23 -2.0 132,358 - GFF4765 0.23 -2.0 132,538 - GFF4765 0.53 -1.1 132,538 - GFF4765 0.53 -0.6 132,588 + GFF4765 0.61 -4.1 132,589 - GFF4765 0.61 +0.6 132,608 + GFF4765 0.64 -0.7 132,608 + GFF4765 0.64 -2.6 132,608 + GFF4765 0.64 +0.4 132,608 + GFF4765 0.64 -0.1 132,608 + GFF4765 0.64 -2.9 132,608 + GFF4765 0.64 -0.7 132,608 + GFF4765 0.64 -3.3 132,608 + GFF4765 0.64 -2.8 132,608 + GFF4765 0.64 -1.1 132,608 + GFF4765 0.64 -1.7 132,608 + GFF4765 0.64 -1.1 132,609 - GFF4765 0.64 +0.6 132,609 - GFF4765 0.64 -1.3 132,609 - GFF4765 0.64 -1.2 132,609 - GFF4765 0.64 -1.0 132,609 - GFF4765 0.64 -0.9 132,609 - GFF4765 0.64 -1.9 132,609 - GFF4765 0.64 -3.4 132,609 - GFF4765 0.64 -0.3 132,609 - GFF4765 0.64 +0.3 132,609 - GFF4765 0.64 -1.0 132,609 - GFF4765 0.64 +0.7 132,612 + GFF4765 0.65 +2.2 132,612 + GFF4765 0.65 -0.8 132,612 + GFF4765 0.65 -0.1 132,613 - GFF4765 0.65 -3.5 132,613 - GFF4765 0.65 -1.9 132,613 - GFF4765 0.65 +1.7 132,613 - GFF4765 0.65 -4.5 132,613 - GFF4765 0.65 -2.7 133,174 + GFF4766 0.72 -0.9 133,300 + -1.0 133,300 + -0.2 133,300 + -2.8 133,301 - -0.4 133,301 - +0.4 133,303 + -1.6 133,303 + -1.7 133,303 + +0.3 133,303 + +0.2 133,303 + -0.6 133,304 - -1.0 133,304 - +0.9 133,304 - -0.3 133,304 - +1.1 133,304 - -0.8 133,304 - +1.1 133,361 + -0.8 133,361 + -1.6 133,362 - -0.8 133,362 - -0.3 133,667 + GFF4767 0.19 -2.1 133,668 - GFF4767 0.19 +0.0 133,668 - GFF4767 0.19 +1.6
Or see this region's nucleotide sequence