Strain Fitness in Variovorax sp. SCN45 around GFF4734

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4732 and GFF4733 are separated by 9 nucleotidesGFF4733 and GFF4734 overlap by 4 nucleotidesGFF4734 and GFF4735 are separated by 24 nucleotidesGFF4735 and GFF4736 overlap by 4 nucleotides GFF4732 - Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4), at 97,558 to 97,953 GFF4732 GFF4733 - Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family), at 97,963 to 98,754 GFF4733 GFF4734 - Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4), at 98,751 to 101,219 GFF4734 GFF4735 - Nitrate ABC transporter, ATP-binding protein, at 101,244 to 102,053 GFF4735 GFF4736 - Nitrate ABC transporter, permease protein, at 102,050 to 102,970 GFF4736 Position (kb) 98 99 100 101 102Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 97.964 kb on + strandat 97.964 kb on + strandat 97.965 kb on - strandat 97.965 kb on - strandat 97.965 kb on - strandat 97.965 kb on - strandat 97.982 kb on + strandat 97.983 kb on - strandat 98.258 kb on + strand, within GFF4733at 98.259 kb on - strand, within GFF4733at 98.345 kb on + strand, within GFF4733at 98.480 kb on + strand, within GFF4733at 98.481 kb on - strand, within GFF4733at 98.609 kb on + strand, within GFF4733at 98.609 kb on + strand, within GFF4733at 98.610 kb on - strand, within GFF4733at 98.610 kb on - strand, within GFF4733at 98.921 kb on - strandat 98.944 kb on + strandat 98.944 kb on + strandat 98.944 kb on + strandat 98.945 kb on - strandat 98.945 kb on - strandat 98.965 kb on + strandat 98.966 kb on - strandat 99.007 kb on + strand, within GFF4734at 99.008 kb on - strand, within GFF4734at 99.008 kb on - strand, within GFF4734at 99.084 kb on + strand, within GFF4734at 99.084 kb on + strand, within GFF4734at 99.085 kb on - strand, within GFF4734at 99.088 kb on + strand, within GFF4734at 99.088 kb on + strand, within GFF4734at 99.088 kb on + strand, within GFF4734at 99.088 kb on + strand, within GFF4734at 99.088 kb on + strand, within GFF4734at 99.088 kb on + strand, within GFF4734at 99.089 kb on - strand, within GFF4734at 99.089 kb on - strand, within GFF4734at 99.196 kb on + strand, within GFF4734at 99.196 kb on + strand, within GFF4734at 99.197 kb on - strand, within GFF4734at 99.311 kb on - strand, within GFF4734at 99.424 kb on + strand, within GFF4734at 99.502 kb on + strand, within GFF4734at 99.502 kb on + strand, within GFF4734at 99.502 kb on + strand, within GFF4734at 99.502 kb on + strand, within GFF4734at 99.503 kb on - strand, within GFF4734at 99.503 kb on - strand, within GFF4734at 99.598 kb on + strand, within GFF4734at 99.598 kb on + strand, within GFF4734at 99.599 kb on - strand, within GFF4734at 99.601 kb on + strand, within GFF4734at 99.601 kb on + strand, within GFF4734at 99.601 kb on + strand, within GFF4734at 99.601 kb on + strand, within GFF4734at 99.601 kb on + strand, within GFF4734at 99.601 kb on + strand, within GFF4734at 99.601 kb on + strand, within GFF4734at 99.602 kb on - strand, within GFF4734at 99.602 kb on - strand, within GFF4734at 99.682 kb on + strand, within GFF4734at 99.682 kb on + strand, within GFF4734at 99.769 kb on + strand, within GFF4734at 99.770 kb on - strand, within GFF4734at 100.067 kb on - strand, within GFF4734at 100.067 kb on - strand, within GFF4734at 100.141 kb on + strand, within GFF4734at 100.142 kb on - strand, within GFF4734at 100.264 kb on + strand, within GFF4734at 100.264 kb on + strand, within GFF4734at 100.264 kb on + strand, within GFF4734at 100.265 kb on - strand, within GFF4734at 100.378 kb on + strand, within GFF4734at 100.378 kb on + strand, within GFF4734at 100.379 kb on - strand, within GFF4734at 100.901 kb on - strand, within GFF4734at 101.077 kb on + strandat 101.077 kb on + strandat 101.077 kb on + strandat 101.078 kb on - strandat 101.078 kb on - strandat 101.116 kb on + strandat 101.116 kb on + strandat 101.116 kb on + strandat 101.281 kb on + strandat 101.281 kb on + strandat 101.282 kb on - strandat 101.317 kb on + strandat 101.317 kb on + strandat 101.317 kb on + strandat 101.317 kb on + strandat 101.318 kb on - strandat 101.749 kb on + strand, within GFF4735at 101.749 kb on + strand, within GFF4735at 101.749 kb on + strand, within GFF4735at 101.749 kb on + strand, within GFF4735at 101.750 kb on - strand, within GFF4735at 101.750 kb on - strand, within GFF4735at 101.751 kb on + strand, within GFF4735at 101.751 kb on + strand, within GFF4735at 101.751 kb on + strand, within GFF4735at 101.751 kb on + strand, within GFF4735at 101.751 kb on + strand, within GFF4735at 101.751 kb on + strand, within GFF4735at 101.751 kb on + strand, within GFF4735at 101.751 kb on + strand, within GFF4735at 101.752 kb on - strand, within GFF4735at 101.752 kb on - strand, within GFF4735at 101.752 kb on - strand, within GFF4735at 101.752 kb on - strand, within GFF4735at 102.034 kb on + strandat 102.034 kb on + strandat 102.034 kb on + strandat 102.035 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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97,964 + -0.8
97,964 + -1.2
97,965 - +3.8
97,965 - +0.1
97,965 - -1.1
97,965 - -2.6
97,982 + -3.4
97,983 - -1.0
98,258 + GFF4733 0.37 -0.6
98,259 - GFF4733 0.37 -0.2
98,345 + GFF4733 0.48 +0.4
98,480 + GFF4733 0.65 +0.0
98,481 - GFF4733 0.65 +0.4
98,609 + GFF4733 0.82 +0.0
98,609 + GFF4733 0.82 -3.1
98,610 - GFF4733 0.82 +0.9
98,610 - GFF4733 0.82 +1.4
98,921 - -1.4
98,944 + +0.4
98,944 + -1.1
98,944 + -0.4
98,945 - +3.2
98,945 - -3.1
98,965 + -1.5
98,966 - -0.6
99,007 + GFF4734 0.10 -0.6
99,008 - GFF4734 0.10 -0.9
99,008 - GFF4734 0.10 -1.5
99,084 + GFF4734 0.13 -3.4
99,084 + GFF4734 0.13 -2.7
99,085 - GFF4734 0.14 +2.8
99,088 + GFF4734 0.14 -0.0
99,088 + GFF4734 0.14 +1.7
99,088 + GFF4734 0.14 -0.6
99,088 + GFF4734 0.14 -0.6
99,088 + GFF4734 0.14 -1.7
99,088 + GFF4734 0.14 +0.2
99,089 - GFF4734 0.14 +0.0
99,089 - GFF4734 0.14 -0.2
99,196 + GFF4734 0.18 -2.5
99,196 + GFF4734 0.18 -0.9
99,197 - GFF4734 0.18 +0.9
99,311 - GFF4734 0.23 -1.0
99,424 + GFF4734 0.27 -0.3
99,502 + GFF4734 0.30 +0.4
99,502 + GFF4734 0.30 +0.3
99,502 + GFF4734 0.30 -0.0
99,502 + GFF4734 0.30 +0.3
99,503 - GFF4734 0.30 -0.3
99,503 - GFF4734 0.30 -0.3
99,598 + GFF4734 0.34 +0.0
99,598 + GFF4734 0.34 +0.9
99,599 - GFF4734 0.34 -0.3
99,601 + GFF4734 0.34 -0.3
99,601 + GFF4734 0.34 -1.4
99,601 + GFF4734 0.34 -0.6
99,601 + GFF4734 0.34 +0.5
99,601 + GFF4734 0.34 -2.1
99,601 + GFF4734 0.34 -0.6
99,601 + GFF4734 0.34 -0.6
99,602 - GFF4734 0.34 -1.1
99,602 - GFF4734 0.34 -1.4
99,682 + GFF4734 0.38 +0.5
99,682 + GFF4734 0.38 -0.6
99,769 + GFF4734 0.41 -0.6
99,770 - GFF4734 0.41 -0.7
100,067 - GFF4734 0.53 +0.8
100,067 - GFF4734 0.53 -2.1
100,141 + GFF4734 0.56 +0.9
100,142 - GFF4734 0.56 -2.5
100,264 + GFF4734 0.61 -1.1
100,264 + GFF4734 0.61 +0.8
100,264 + GFF4734 0.61 +1.4
100,265 - GFF4734 0.61 -3.1
100,378 + GFF4734 0.66 -1.4
100,378 + GFF4734 0.66 -1.6
100,379 - GFF4734 0.66 -0.3
100,901 - GFF4734 0.87 -0.2
101,077 + -0.5
101,077 + +0.7
101,077 + -0.4
101,078 - -1.7
101,078 - -1.0
101,116 + +0.0
101,116 + -0.3
101,116 + -1.0
101,281 + +0.9
101,281 + -1.1
101,282 - -1.0
101,317 + +2.3
101,317 + -0.9
101,317 + +1.0
101,317 + -1.0
101,318 - -0.2
101,749 + GFF4735 0.62 -2.6
101,749 + GFF4735 0.62 +0.5
101,749 + GFF4735 0.62 +1.0
101,749 + GFF4735 0.62 -1.0
101,750 - GFF4735 0.62 -2.0
101,750 - GFF4735 0.62 -1.1
101,751 + GFF4735 0.63 +2.6
101,751 + GFF4735 0.63 +0.2
101,751 + GFF4735 0.63 +1.0
101,751 + GFF4735 0.63 -0.3
101,751 + GFF4735 0.63 -1.2
101,751 + GFF4735 0.63 +2.0
101,751 + GFF4735 0.63 -0.3
101,751 + GFF4735 0.63 -1.4
101,752 - GFF4735 0.63 +1.0
101,752 - GFF4735 0.63 -3.6
101,752 - GFF4735 0.63 +0.3
101,752 - GFF4735 0.63 -0.8
102,034 + -1.4
102,034 + -0.8
102,034 + -0.4
102,035 - +0.5

Or see this region's nucleotide sequence