Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4678 and GFF4679 overlap by 1 nucleotides GFF4679 and GFF4680 are separated by 117 nucleotides GFF4680 and GFF4681 are separated by 76 nucleotides
GFF4678 - FIG00348290: hypothetical protein, at 36,113 to 38,359
GFF4678
GFF4679 - Inositol-1-monophosphatase (EC 3.1.3.25), at 38,359 to 39,423
GFF4679
GFF4680 - tRNA (cytidine(32)/uridine(32)-2'-O)-methyltransferase (EC 2.1.1.200), at 39,541 to 40,281
GFF4680
GFF4681 - Serine acetyltransferase (EC 2.3.1.30), at 40,358 to 41,131
GFF4681
Position (kb) 38
39
40 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 37.591 kb on - strand, within GFF4678 at 37.806 kb on + strand, within GFF4678 at 37.807 kb on - strand, within GFF4678 at 37.807 kb on - strand, within GFF4678 at 37.807 kb on - strand, within GFF4678 at 37.807 kb on - strand, within GFF4678 at 37.807 kb on - strand, within GFF4678 at 37.882 kb on - strand, within GFF4678 at 38.295 kb on + strand at 38.295 kb on + strand at 38.295 kb on + strand at 38.295 kb on + strand at 38.296 kb on - strand at 38.296 kb on - strand at 38.296 kb on - strand at 38.296 kb on - strand at 38.296 kb on - strand at 38.296 kb on - strand at 38.522 kb on + strand, within GFF4679 at 38.522 kb on + strand, within GFF4679 at 38.522 kb on + strand, within GFF4679 at 38.523 kb on - strand, within GFF4679 at 38.523 kb on - strand, within GFF4679 at 38.523 kb on - strand, within GFF4679 at 38.523 kb on - strand, within GFF4679 at 38.627 kb on + strand, within GFF4679 at 38.627 kb on + strand, within GFF4679 at 38.627 kb on + strand, within GFF4679 at 38.628 kb on - strand, within GFF4679 at 38.628 kb on - strand, within GFF4679 at 39.444 kb on - strand at 39.444 kb on - strand at 39.444 kb on - strand at 39.444 kb on - strand at 39.444 kb on - strand at 39.445 kb on - strand at 39.505 kb on + strand at 39.916 kb on + strand, within GFF4680 at 40.000 kb on + strand, within GFF4680 at 40.000 kb on + strand, within GFF4680 at 40.001 kb on - strand, within GFF4680 at 40.001 kb on - strand, within GFF4680 at 40.027 kb on + strand, within GFF4680 at 40.120 kb on - strand, within GFF4680 at 40.279 kb on + strand at 40.297 kb on - strand at 40.297 kb on - strand at 40.315 kb on - strand at 40.316 kb on + strand at 40.316 kb on + strand at 40.316 kb on + strand at 40.316 kb on + strand at 40.317 kb on - strand at 40.317 kb on - strand at 40.317 kb on - strand at 40.317 kb on - strand at 40.317 kb on - strand at 40.317 kb on - strand at 40.339 kb on - strand at 40.340 kb on + strand at 40.340 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 37,591 - GFF4678 0.66 -0.9 37,806 + GFF4678 0.75 +1.4 37,807 - GFF4678 0.75 +0.9 37,807 - GFF4678 0.75 +1.7 37,807 - GFF4678 0.75 -1.9 37,807 - GFF4678 0.75 -1.4 37,807 - GFF4678 0.75 -2.3 37,882 - GFF4678 0.79 -0.6 38,295 + +0.2 38,295 + -1.8 38,295 + -1.1 38,295 + -1.0 38,296 - -2.0 38,296 - +0.4 38,296 - +1.0 38,296 - -0.5 38,296 - -0.8 38,296 - -2.6 38,522 + GFF4679 0.15 +0.0 38,522 + GFF4679 0.15 -2.1 38,522 + GFF4679 0.15 +1.2 38,523 - GFF4679 0.15 -2.9 38,523 - GFF4679 0.15 -0.1 38,523 - GFF4679 0.15 +0.8 38,523 - GFF4679 0.15 -2.5 38,627 + GFF4679 0.25 -2.2 38,627 + GFF4679 0.25 +1.2 38,627 + GFF4679 0.25 -1.4 38,628 - GFF4679 0.25 -1.0 38,628 - GFF4679 0.25 +1.0 39,444 - +0.5 39,444 - +0.1 39,444 - +2.0 39,444 - +0.3 39,444 - -0.3 39,445 - -0.7 39,505 + -3.8 39,916 + GFF4680 0.51 -2.1 40,000 + GFF4680 0.62 -1.2 40,000 + GFF4680 0.62 +1.2 40,001 - GFF4680 0.62 -1.8 40,001 - GFF4680 0.62 -3.0 40,027 + GFF4680 0.66 -2.2 40,120 - GFF4680 0.78 -0.4 40,279 + -2.2 40,297 - +2.3 40,297 - -1.0 40,315 - -0.2 40,316 + -3.8 40,316 + +1.2 40,316 + +1.0 40,316 + -0.1 40,317 - +1.4 40,317 - -1.6 40,317 - -3.9 40,317 - +1.9 40,317 - +0.6 40,317 - -2.5 40,339 - +1.0 40,340 + -1.1 40,340 + -0.4
Or see this region's nucleotide sequence