Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4613 and GFF4614 are separated by 9 nucleotides GFF4614 and GFF4615 are separated by 27 nucleotides GFF4615 and GFF4616 are separated by 26 nucleotides
GFF4613 - Transcriptional regulator, LysR family, at 255,539 to 256,426
GFF4613
GFF4614 - Transcriptional regulator, AraC family, at 256,436 to 257,287
GFF4614
GFF4615 - 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase, at 257,315 to 258,163
GFF4615
GFF4616 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 258,190 to 258,936
GFF4616
Position (kb) 256
257
258 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 256.346 kb on + strand at 256.346 kb on + strand at 256.347 kb on - strand at 256.347 kb on - strand at 256.347 kb on - strand at 256.347 kb on - strand at 256.347 kb on - strand at 256.347 kb on - strand at 256.347 kb on - strand at 256.353 kb on - strand at 256.353 kb on - strand at 256.398 kb on - strand at 256.398 kb on - strand at 256.398 kb on - strand at 256.438 kb on - strand at 257.020 kb on - strand, within GFF4614 at 257.020 kb on - strand, within GFF4614 at 257.107 kb on - strand, within GFF4614 at 257.172 kb on + strand, within GFF4614 at 257.173 kb on - strand, within GFF4614 at 257.196 kb on + strand, within GFF4614 at 257.196 kb on + strand, within GFF4614 at 257.487 kb on + strand, within GFF4615 at 257.488 kb on - strand, within GFF4615 at 257.488 kb on - strand, within GFF4615 at 257.716 kb on - strand, within GFF4615 at 257.728 kb on - strand, within GFF4615 at 257.754 kb on + strand, within GFF4615 at 257.755 kb on - strand, within GFF4615 at 257.755 kb on - strand, within GFF4615 at 257.925 kb on + strand, within GFF4615 at 257.925 kb on + strand, within GFF4615 at 257.925 kb on + strand, within GFF4615 at 257.926 kb on - strand, within GFF4615 at 257.926 kb on - strand, within GFF4615 at 257.926 kb on - strand, within GFF4615 at 257.926 kb on - strand, within GFF4615 at 258.194 kb on + strand at 258.194 kb on + strand at 258.195 kb on - strand at 258.195 kb on - strand at 258.195 kb on - strand at 258.195 kb on - strand at 258.195 kb on - strand at 258.195 kb on - strand at 258.195 kb on - strand at 258.195 kb on - strand at 258.195 kb on - strand at 258.195 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 256,346 + +0.4 256,346 + -1.0 256,347 - -3.5 256,347 - +1.8 256,347 - -1.4 256,347 - +2.5 256,347 - -0.3 256,347 - +1.4 256,347 - +0.8 256,353 - -2.8 256,353 - +0.4 256,398 - -2.0 256,398 - -2.1 256,398 - +1.1 256,438 - -2.3 257,020 - GFF4614 0.69 -0.2 257,020 - GFF4614 0.69 -1.1 257,107 - GFF4614 0.79 -0.3 257,172 + GFF4614 0.86 -1.7 257,173 - GFF4614 0.87 -1.0 257,196 + GFF4614 0.89 -0.6 257,196 + GFF4614 0.89 -3.5 257,487 + GFF4615 0.20 -1.5 257,488 - GFF4615 0.20 -1.5 257,488 - GFF4615 0.20 -1.4 257,716 - GFF4615 0.47 -2.4 257,728 - GFF4615 0.49 +0.8 257,754 + GFF4615 0.52 +0.0 257,755 - GFF4615 0.52 -1.0 257,755 - GFF4615 0.52 -1.6 257,925 + GFF4615 0.72 +0.6 257,925 + GFF4615 0.72 -1.5 257,925 + GFF4615 0.72 -1.4 257,926 - GFF4615 0.72 -0.7 257,926 - GFF4615 0.72 -0.1 257,926 - GFF4615 0.72 -0.8 257,926 - GFF4615 0.72 -3.5 258,194 + +2.2 258,194 + -0.2 258,195 - +0.9 258,195 - +2.9 258,195 - -0.8 258,195 - +1.4 258,195 - -2.7 258,195 - -1.0 258,195 - -0.2 258,195 - -0.2 258,195 - +0.1 258,195 - +1.2
Or see this region's nucleotide sequence