Strain Fitness in Variovorax sp. SCN45 around GFF46

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
48,649	+		GFF45	0.65	+0.4
48,859	+		GFF45	0.74	+1.3
48,860	-		GFF45	0.74	-2.6
48,956	-		GFF45	0.78	-0.4
48,956	-		GFF45	0.78	-2.2
48,956	-		GFF45	0.78	-2.5
48,956	-		GFF45	0.78	-2.1
48,991	+		GFF45	0.80	-1.8
48,992	-		GFF45	0.80	-0.9
48,992	-		GFF45	0.80	-1.8
48,992	-		GFF45	0.80	-0.0
48,992	-		GFF45	0.80	-0.3
48,992	-		GFF45	0.80	-0.6
49,057	+		GFF45	0.83	-2.0
49,057	+		GFF45	0.83	-2.8
49,057	+		GFF45	0.83	-2.7
49,057	+		GFF45	0.83	-0.1
49,057	+		GFF45	0.83	-2.2
49,058	-		GFF45	0.83	+1.3
49,058	-		GFF45	0.83	-1.1
49,058	-		GFF45	0.83	-3.2
49,162	+		GFF45	0.87	-0.2
49,187	-		GFF45	0.88	-0.8
49,187	-		GFF45	0.88	-2.2
49,187	-		GFF45	0.88	-1.5
49,187	-		GFF45	0.88	-2.4
49,333	+				+0.0
49,333	+				-0.0
49,333	+				+0.4
49,334	-				+0.0
49,334	-				+0.2
49,369	+				-2.3
49,370	-				-2.0
49,370	-				+0.8
49,370	-				-1.1
49,373	-				-2.0
49,511	-				+0.3
49,511	-				-1.2
50,222	+		GFF46	0.86	-0.2
50,222	+		GFF46	0.86	-1.1
50,223	-		GFF46	0.86	-2.8
50,356	-				+0.3
50,445	+				-0.8
50,445	+				-0.8
50,445	+				-1.8
50,445	+				-2.9
50,445	+				+0.4
50,551	-				-0.4
50,709	+		GFF47	0.13	-0.2
50,710	-		GFF47	0.13	-1.8