Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4535 and GFF4536 are separated by 18 nucleotides GFF4536 and GFF4537 overlap by 4 nucleotides GFF4537 and GFF4538 are separated by 0 nucleotides GFF4538 and GFF4539 are separated by 21 nucleotides GFF4539 and GFF4540 are separated by 375 nucleotides
GFF4535 - Tetrapartite efflux system, membrane fusion component FusE-like, at 173,924 to 174,862
GFF4535
GFF4536 - Tetrapartite efflux system component, FusD-like, at 174,881 to 175,087
GFF4536
GFF4537 - Tetrapartite efflux system, inner membrane component FusBC-like, at 175,084 to 177,216
GFF4537
GFF4538 - Transcriptional regulator, MarR family, at 177,217 to 177,684
GFF4538
GFF4539 - no description, at 177,706 to 177,831
GFF4539
GFF4540 - hypothetical protein, at 178,207 to 179,388
GFF4540
Position (kb) 175
176
177
178 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 174.255 kb on + strand, within GFF4535 at 174.256 kb on - strand, within GFF4535 at 174.256 kb on - strand, within GFF4535 at 174.256 kb on - strand, within GFF4535 at 174.256 kb on - strand, within GFF4535 at 174.267 kb on + strand, within GFF4535 at 174.267 kb on + strand, within GFF4535 at 174.267 kb on + strand, within GFF4535 at 174.267 kb on + strand, within GFF4535 at 174.267 kb on + strand, within GFF4535 at 174.268 kb on - strand, within GFF4535 at 174.318 kb on + strand, within GFF4535 at 174.318 kb on + strand, within GFF4535 at 174.318 kb on + strand, within GFF4535 at 174.318 kb on + strand, within GFF4535 at 174.318 kb on + strand, within GFF4535 at 174.318 kb on + strand, within GFF4535 at 174.318 kb on + strand, within GFF4535 at 174.318 kb on + strand, within GFF4535 at 174.319 kb on - strand, within GFF4535 at 174.319 kb on - strand, within GFF4535 at 174.592 kb on - strand, within GFF4535 at 174.744 kb on + strand, within GFF4535 at 174.744 kb on + strand, within GFF4535 at 174.744 kb on + strand, within GFF4535 at 174.745 kb on - strand, within GFF4535 at 174.745 kb on - strand, within GFF4535 at 174.745 kb on - strand, within GFF4535 at 174.875 kb on - strand at 174.878 kb on + strand at 174.879 kb on - strand at 174.879 kb on - strand at 174.879 kb on - strand at 174.879 kb on - strand at 174.882 kb on + strand at 174.882 kb on + strand at 174.882 kb on + strand at 174.882 kb on + strand at 174.882 kb on + strand at 174.883 kb on - strand at 174.891 kb on + strand at 174.891 kb on + strand at 174.891 kb on + strand at 174.891 kb on + strand at 174.892 kb on - strand at 174.892 kb on - strand at 174.892 kb on - strand at 174.915 kb on + strand, within GFF4536 at 174.916 kb on - strand, within GFF4536 at 174.930 kb on + strand, within GFF4536 at 174.930 kb on + strand, within GFF4536 at 174.930 kb on + strand, within GFF4536 at 174.931 kb on - strand, within GFF4536 at 174.931 kb on - strand, within GFF4536 at 174.931 kb on - strand, within GFF4536 at 174.972 kb on + strand, within GFF4536 at 174.972 kb on + strand, within GFF4536 at 175.056 kb on + strand, within GFF4536 at 175.056 kb on + strand, within GFF4536 at 175.056 kb on + strand, within GFF4536 at 175.056 kb on + strand, within GFF4536 at 175.056 kb on + strand, within GFF4536 at 175.056 kb on + strand, within GFF4536 at 175.056 kb on + strand, within GFF4536 at 175.056 kb on + strand, within GFF4536 at 175.057 kb on - strand, within GFF4536 at 175.057 kb on - strand, within GFF4536 at 175.057 kb on - strand, within GFF4536 at 175.057 kb on - strand, within GFF4536 at 175.057 kb on - strand, within GFF4536 at 175.057 kb on - strand, within GFF4536 at 175.496 kb on + strand, within GFF4537 at 175.496 kb on + strand, within GFF4537 at 175.496 kb on + strand, within GFF4537 at 175.496 kb on + strand, within GFF4537 at 175.496 kb on + strand, within GFF4537 at 175.497 kb on - strand, within GFF4537 at 175.497 kb on - strand, within GFF4537 at 175.497 kb on - strand, within GFF4537 at 175.497 kb on - strand, within GFF4537 at 175.497 kb on - strand, within GFF4537 at 175.497 kb on - strand, within GFF4537 at 175.514 kb on + strand, within GFF4537 at 175.515 kb on - strand, within GFF4537 at 175.515 kb on - strand, within GFF4537 at 175.772 kb on + strand, within GFF4537 at 175.772 kb on + strand, within GFF4537 at 175.772 kb on + strand, within GFF4537 at 175.772 kb on + strand, within GFF4537 at 175.772 kb on + strand, within GFF4537 at 175.773 kb on - strand, within GFF4537 at 175.773 kb on - strand, within GFF4537 at 175.773 kb on - strand, within GFF4537 at 175.773 kb on - strand, within GFF4537 at 175.773 kb on - strand, within GFF4537 at 175.773 kb on - strand, within GFF4537 at 175.856 kb on + strand, within GFF4537 at 175.856 kb on + strand, within GFF4537 at 175.856 kb on + strand, within GFF4537 at 175.856 kb on + strand, within GFF4537 at 175.856 kb on + strand, within GFF4537 at 175.856 kb on + strand, within GFF4537 at 175.856 kb on + strand, within GFF4537 at 175.856 kb on + strand, within GFF4537 at 175.857 kb on - strand, within GFF4537 at 175.857 kb on - strand, within GFF4537 at 175.857 kb on - strand, within GFF4537 at 175.857 kb on - strand, within GFF4537 at 175.857 kb on - strand, within GFF4537 at 175.857 kb on - strand, within GFF4537 at 175.857 kb on - strand, within GFF4537 at 175.876 kb on - strand, within GFF4537 at 175.876 kb on - strand, within GFF4537 at 175.876 kb on - strand, within GFF4537 at 176.066 kb on + strand, within GFF4537 at 176.066 kb on + strand, within GFF4537 at 176.067 kb on - strand, within GFF4537 at 176.617 kb on - strand, within GFF4537 at 176.858 kb on + strand, within GFF4537 at 176.858 kb on + strand, within GFF4537 at 176.859 kb on - strand, within GFF4537 at 176.879 kb on + strand, within GFF4537 at 176.879 kb on + strand, within GFF4537 at 176.879 kb on + strand, within GFF4537 at 176.879 kb on + strand, within GFF4537 at 176.879 kb on + strand, within GFF4537 at 176.879 kb on + strand, within GFF4537 at 176.879 kb on + strand, within GFF4537 at 176.879 kb on + strand, within GFF4537 at 176.879 kb on - strand, within GFF4537 at 176.880 kb on - strand, within GFF4537 at 176.880 kb on - strand, within GFF4537 at 176.880 kb on - strand, within GFF4537 at 176.880 kb on - strand, within GFF4537 at 177.029 kb on + strand at 177.029 kb on + strand at 177.029 kb on + strand at 177.029 kb on + strand at 177.030 kb on - strand at 177.030 kb on - strand at 177.030 kb on - strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.218 kb on + strand at 177.218 kb on + strand at 177.218 kb on + strand at 177.218 kb on + strand at 177.218 kb on + strand at 177.218 kb on + strand at 177.218 kb on + strand at 177.218 kb on + strand at 177.219 kb on - strand at 177.219 kb on - strand at 177.219 kb on - strand at 177.219 kb on - strand at 177.219 kb on - strand at 177.219 kb on - strand at 177.219 kb on - strand at 177.219 kb on - strand at 177.219 kb on - strand at 177.219 kb on - strand at 177.219 kb on - strand at 177.219 kb on - strand at 177.587 kb on + strand, within GFF4538 at 177.588 kb on - strand, within GFF4538 at 177.743 kb on + strand, within GFF4539 at 177.747 kb on + strand, within GFF4539 at 177.747 kb on + strand, within GFF4539 at 177.747 kb on + strand, within GFF4539 at 177.771 kb on - strand, within GFF4539 at 177.771 kb on - strand, within GFF4539 at 177.771 kb on - strand, within GFF4539 at 177.774 kb on + strand, within GFF4539 at 177.774 kb on + strand, within GFF4539 at 177.774 kb on + strand, within GFF4539 at 177.774 kb on + strand, within GFF4539 at 177.774 kb on + strand, within GFF4539 at 177.774 kb on + strand, within GFF4539 at 177.774 kb on + strand, within GFF4539 at 177.774 kb on + strand, within GFF4539 at 177.775 kb on - strand, within GFF4539 at 177.775 kb on - strand, within GFF4539 at 177.775 kb on - strand, within GFF4539 at 177.775 kb on - strand, within GFF4539 at 177.775 kb on - strand, within GFF4539 at 177.775 kb on - strand, within GFF4539 at 177.775 kb on - strand, within GFF4539 at 177.775 kb on - strand, within GFF4539
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 174,255 + GFF4535 0.35 -3.9 174,256 - GFF4535 0.35 -2.7 174,256 - GFF4535 0.35 -1.3 174,256 - GFF4535 0.35 +1.4 174,256 - GFF4535 0.35 -1.5 174,267 + GFF4535 0.37 -1.9 174,267 + GFF4535 0.37 -1.0 174,267 + GFF4535 0.37 -0.7 174,267 + GFF4535 0.37 +0.8 174,267 + GFF4535 0.37 -2.0 174,268 - GFF4535 0.37 +2.1 174,318 + GFF4535 0.42 -1.8 174,318 + GFF4535 0.42 -1.2 174,318 + GFF4535 0.42 +0.8 174,318 + GFF4535 0.42 +0.4 174,318 + GFF4535 0.42 -1.7 174,318 + GFF4535 0.42 +1.4 174,318 + GFF4535 0.42 -1.0 174,318 + GFF4535 0.42 +0.2 174,319 - GFF4535 0.42 -1.0 174,319 - GFF4535 0.42 -1.0 174,592 - GFF4535 0.71 +0.7 174,744 + GFF4535 0.87 -0.6 174,744 + GFF4535 0.87 +1.4 174,744 + GFF4535 0.87 +2.4 174,745 - GFF4535 0.87 -3.4 174,745 - GFF4535 0.87 -1.3 174,745 - GFF4535 0.87 +0.6 174,875 - -1.0 174,878 + -2.6 174,879 - -0.2 174,879 - -1.6 174,879 - -1.8 174,879 - +0.6 174,882 + -0.3 174,882 + -1.3 174,882 + +0.2 174,882 + +1.6 174,882 + +0.1 174,883 - +2.2 174,891 + -0.5 174,891 + -0.6 174,891 + -2.4 174,891 + +0.1 174,892 - -1.2 174,892 - -2.2 174,892 - -0.2 174,915 + GFF4536 0.16 -0.1 174,916 - GFF4536 0.17 +0.3 174,930 + GFF4536 0.24 +0.3 174,930 + GFF4536 0.24 -2.7 174,930 + GFF4536 0.24 -1.2 174,931 - GFF4536 0.24 +3.1 174,931 - GFF4536 0.24 +1.0 174,931 - GFF4536 0.24 -0.6 174,972 + GFF4536 0.44 +0.7 174,972 + GFF4536 0.44 +0.4 175,056 + GFF4536 0.85 -1.1 175,056 + GFF4536 0.85 -0.2 175,056 + GFF4536 0.85 -1.0 175,056 + GFF4536 0.85 -2.8 175,056 + GFF4536 0.85 -0.5 175,056 + GFF4536 0.85 -2.7 175,056 + GFF4536 0.85 -1.2 175,056 + GFF4536 0.85 -1.4 175,057 - GFF4536 0.85 +0.1 175,057 - GFF4536 0.85 +3.0 175,057 - GFF4536 0.85 -1.7 175,057 - GFF4536 0.85 -2.6 175,057 - GFF4536 0.85 -1.0 175,057 - GFF4536 0.85 +0.0 175,496 + GFF4537 0.19 -1.3 175,496 + GFF4537 0.19 -2.9 175,496 + GFF4537 0.19 +0.5 175,496 + GFF4537 0.19 +0.7 175,496 + GFF4537 0.19 -1.1 175,497 - GFF4537 0.19 -1.1 175,497 - GFF4537 0.19 -1.1 175,497 - GFF4537 0.19 -0.4 175,497 - GFF4537 0.19 +0.4 175,497 - GFF4537 0.19 -0.2 175,497 - GFF4537 0.19 +2.0 175,514 + GFF4537 0.20 -1.1 175,515 - GFF4537 0.20 +1.7 175,515 - GFF4537 0.20 +0.4 175,772 + GFF4537 0.32 +1.1 175,772 + GFF4537 0.32 +0.8 175,772 + GFF4537 0.32 -0.9 175,772 + GFF4537 0.32 +0.1 175,772 + GFF4537 0.32 -2.5 175,773 - GFF4537 0.32 +0.4 175,773 - GFF4537 0.32 -1.7 175,773 - GFF4537 0.32 +1.7 175,773 - GFF4537 0.32 -1.2 175,773 - GFF4537 0.32 +0.9 175,773 - GFF4537 0.32 -1.0 175,856 + GFF4537 0.36 +0.4 175,856 + GFF4537 0.36 -0.4 175,856 + GFF4537 0.36 -0.7 175,856 + GFF4537 0.36 +2.7 175,856 + GFF4537 0.36 -1.8 175,856 + GFF4537 0.36 -0.8 175,856 + GFF4537 0.36 -1.2 175,856 + GFF4537 0.36 +0.4 175,857 - GFF4537 0.36 +2.4 175,857 - GFF4537 0.36 +0.2 175,857 - GFF4537 0.36 -0.8 175,857 - GFF4537 0.36 -0.2 175,857 - GFF4537 0.36 +0.4 175,857 - GFF4537 0.36 -0.4 175,857 - GFF4537 0.36 -1.4 175,876 - GFF4537 0.37 -0.3 175,876 - GFF4537 0.37 -1.7 175,876 - GFF4537 0.37 -2.5 176,066 + GFF4537 0.46 -0.7 176,066 + GFF4537 0.46 -1.4 176,067 - GFF4537 0.46 -2.0 176,617 - GFF4537 0.72 -0.0 176,858 + GFF4537 0.83 +0.6 176,858 + GFF4537 0.83 -0.2 176,859 - GFF4537 0.83 -0.4 176,879 + GFF4537 0.84 -0.6 176,879 + GFF4537 0.84 -2.5 176,879 + GFF4537 0.84 -0.9 176,879 + GFF4537 0.84 -0.6 176,879 + GFF4537 0.84 +2.6 176,879 + GFF4537 0.84 +0.5 176,879 + GFF4537 0.84 -0.7 176,879 + GFF4537 0.84 -1.6 176,879 - GFF4537 0.84 -1.6 176,880 - GFF4537 0.84 -1.3 176,880 - GFF4537 0.84 +0.8 176,880 - GFF4537 0.84 +2.4 176,880 - GFF4537 0.84 -1.3 177,029 + +1.7 177,029 + -0.7 177,029 + -2.8 177,029 + -1.2 177,030 - -0.6 177,030 - -2.3 177,030 - +0.1 177,077 + +1.3 177,077 + +0.8 177,077 + -0.8 177,077 + -1.3 177,077 + -0.6 177,077 + +0.8 177,077 + -0.9 177,077 + +0.1 177,077 + -0.8 177,077 + +0.5 177,077 + +2.1 177,077 + -2.0 177,077 + -2.4 177,077 + -2.9 177,077 + +0.1 177,077 + +0.3 177,077 + -1.6 177,077 + -0.2 177,077 + +1.1 177,077 + -2.2 177,077 + +0.2 177,077 + -0.5 177,077 + -0.7 177,077 + +1.4 177,077 + +0.2 177,077 + -1.7 177,077 + -0.7 177,077 + +1.4 177,077 + -1.0 177,078 - +0.9 177,078 - +0.8 177,078 - +0.4 177,078 - +0.9 177,078 - -0.0 177,078 - -2.6 177,078 - -3.1 177,078 - -1.5 177,078 - +0.6 177,078 - -0.4 177,078 - +0.1 177,078 - +0.4 177,078 - -2.5 177,078 - -0.9 177,078 - -2.5 177,078 - -1.3 177,078 - +0.1 177,078 - +0.8 177,078 - +0.3 177,078 - +1.2 177,078 - -2.1 177,078 - -1.4 177,078 - +1.4 177,078 - -0.9 177,078 - -0.6 177,078 - -0.8 177,078 - -0.8 177,131 + -1.5 177,131 + +0.4 177,131 + -0.2 177,131 + +1.4 177,131 + -2.5 177,131 + -4.0 177,131 + -2.9 177,131 + -0.8 177,131 + -0.5 177,131 + +0.8 177,131 + +2.8 177,131 + +1.8 177,131 + -0.2 177,131 + +0.3 177,131 + +0.4 177,131 + -0.7 177,131 + +0.5 177,131 + +0.1 177,132 - +0.8 177,132 - +0.7 177,132 - -2.8 177,132 - +0.6 177,132 - +3.4 177,132 - +0.6 177,132 - +0.1 177,132 - -0.8 177,132 - -2.2 177,132 - -0.4 177,132 - -2.1 177,132 - +0.5 177,132 - -3.7 177,132 - -1.4 177,132 - -0.5 177,132 - -0.4 177,132 - +1.4 177,132 - -0.7 177,132 - -0.7 177,132 - -0.5 177,218 + -0.5 177,218 + -0.9 177,218 + +2.1 177,218 + -0.3 177,218 + -1.7 177,218 + +1.1 177,218 + -0.1 177,218 + -2.7 177,219 - +1.2 177,219 - -0.8 177,219 - +0.4 177,219 - +2.1 177,219 - -0.8 177,219 - +0.5 177,219 - -1.1 177,219 - -0.6 177,219 - -0.0 177,219 - -1.3 177,219 - +1.7 177,219 - +0.1 177,587 + GFF4538 0.79 -1.4 177,588 - GFF4538 0.79 +1.8 177,743 + GFF4539 0.29 +0.5 177,747 + GFF4539 0.33 +0.6 177,747 + GFF4539 0.33 +0.8 177,747 + GFF4539 0.33 +0.3 177,771 - GFF4539 0.52 -0.3 177,771 - GFF4539 0.52 -0.1 177,771 - GFF4539 0.52 +2.8 177,774 + GFF4539 0.54 +0.5 177,774 + GFF4539 0.54 -0.6 177,774 + GFF4539 0.54 -1.5 177,774 + GFF4539 0.54 -2.4 177,774 + GFF4539 0.54 +0.3 177,774 + GFF4539 0.54 -0.2 177,774 + GFF4539 0.54 +0.4 177,774 + GFF4539 0.54 +0.5 177,775 - GFF4539 0.55 -0.5 177,775 - GFF4539 0.55 +1.0 177,775 - GFF4539 0.55 +1.2 177,775 - GFF4539 0.55 -1.0 177,775 - GFF4539 0.55 -0.3 177,775 - GFF4539 0.55 +1.7 177,775 - GFF4539 0.55 -0.7 177,775 - GFF4539 0.55 -1.4
Or see this region's nucleotide sequence