Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4260 and GFF4261 are separated by 160 nucleotides GFF4261 and GFF4262 overlap by 4 nucleotides GFF4262 and GFF4263 are separated by 126 nucleotides
GFF4260 - hypothetical protein, at 175,017 to 179,039
GFF4260
GFF4261 - RNA polymerase ECF-type sigma factor, at 179,200 to 179,751
GFF4261
GFF4262 - hypothetical protein, at 179,748 to 180,893
GFF4262
GFF4263 - TonB-dependent siderophore receptor, at 181,020 to 183,482
GFF4263
Position (kb) 179
180
181 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 179.112 kb on + strand at 179.112 kb on + strand at 179.195 kb on - strand at 179.212 kb on + strand at 179.212 kb on + strand at 179.213 kb on - strand at 179.213 kb on - strand at 179.213 kb on - strand at 179.215 kb on + strand at 179.216 kb on - strand at 179.290 kb on + strand, within GFF4261 at 179.290 kb on + strand, within GFF4261 at 179.354 kb on - strand, within GFF4261 at 179.354 kb on - strand, within GFF4261 at 179.354 kb on - strand, within GFF4261 at 179.509 kb on + strand, within GFF4261 at 179.509 kb on + strand, within GFF4261 at 179.509 kb on + strand, within GFF4261 at 179.509 kb on + strand, within GFF4261 at 179.509 kb on + strand, within GFF4261 at 179.510 kb on - strand, within GFF4261 at 179.510 kb on - strand, within GFF4261 at 179.510 kb on - strand, within GFF4261 at 179.735 kb on + strand at 179.735 kb on + strand at 179.736 kb on - strand at 179.736 kb on - strand at 179.736 kb on - strand at 179.736 kb on - strand at 179.817 kb on + strand at 179.817 kb on + strand at 179.818 kb on - strand at 179.949 kb on + strand, within GFF4262 at 179.950 kb on - strand, within GFF4262 at 179.950 kb on - strand, within GFF4262 at 180.246 kb on + strand, within GFF4262 at 180.247 kb on - strand, within GFF4262 at 180.247 kb on - strand, within GFF4262 at 180.247 kb on - strand, within GFF4262 at 180.247 kb on - strand, within GFF4262 at 180.339 kb on + strand, within GFF4262 at 180.340 kb on - strand, within GFF4262 at 180.980 kb on - strand at 180.980 kb on - strand at 180.997 kb on + strand at 180.998 kb on - strand at 181.458 kb on + strand, within GFF4263 at 181.459 kb on - strand, within GFF4263 at 181.693 kb on - strand, within GFF4263 at 181.693 kb on - strand, within GFF4263 at 181.737 kb on + strand, within GFF4263 at 181.737 kb on + strand, within GFF4263 at 181.737 kb on + strand, within GFF4263 at 181.738 kb on - strand, within GFF4263 at 181.738 kb on - strand, within GFF4263 at 181.738 kb on - strand, within GFF4263 at 181.882 kb on - strand, within GFF4263
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 179,112 + +2.7 179,112 + +0.0 179,195 - -1.1 179,212 + +0.0 179,212 + +1.2 179,213 - -3.7 179,213 - -0.6 179,213 - -0.1 179,215 + +1.6 179,216 - -0.6 179,290 + GFF4261 0.16 -0.3 179,290 + GFF4261 0.16 +1.3 179,354 - GFF4261 0.28 -0.3 179,354 - GFF4261 0.28 -1.8 179,354 - GFF4261 0.28 +0.6 179,509 + GFF4261 0.56 -1.3 179,509 + GFF4261 0.56 -0.9 179,509 + GFF4261 0.56 -0.5 179,509 + GFF4261 0.56 -0.8 179,509 + GFF4261 0.56 -2.7 179,510 - GFF4261 0.56 +1.3 179,510 - GFF4261 0.56 -1.0 179,510 - GFF4261 0.56 -2.3 179,735 + -0.8 179,735 + -0.5 179,736 - +0.5 179,736 - +0.7 179,736 - -1.9 179,736 - -0.7 179,817 + +0.4 179,817 + -1.1 179,818 - -2.0 179,949 + GFF4262 0.18 -2.0 179,950 - GFF4262 0.18 +0.3 179,950 - GFF4262 0.18 -0.6 180,246 + GFF4262 0.43 -1.2 180,247 - GFF4262 0.44 -0.7 180,247 - GFF4262 0.44 -2.6 180,247 - GFF4262 0.44 -2.1 180,247 - GFF4262 0.44 -0.7 180,339 + GFF4262 0.52 -0.8 180,340 - GFF4262 0.52 +0.9 180,980 - -0.1 180,980 - +0.0 180,997 + -1.7 180,998 - -1.9 181,458 + GFF4263 0.18 +0.4 181,459 - GFF4263 0.18 -2.3 181,693 - GFF4263 0.27 +0.7 181,693 - GFF4263 0.27 -0.5 181,737 + GFF4263 0.29 +0.0 181,737 + GFF4263 0.29 -0.5 181,737 + GFF4263 0.29 -1.3 181,738 - GFF4263 0.29 +0.7 181,738 - GFF4263 0.29 +0.6 181,738 - GFF4263 0.29 -2.5 181,882 - GFF4263 0.35 -0.9
Or see this region's nucleotide sequence