Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4129 and GFF4130 overlap by 4 nucleotides GFF4130 and GFF4131 are separated by 19 nucleotides
GFF4129 - ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines), at 33,292 to 34,941
GFF4129
GFF4130 - Amidase family protein SACE_5032, at 34,938 to 36,458
GFF4130
GFF4131 - ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines), at 36,478 to 38,142
GFF4131
Position (kb) 34
35
36
37 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 34.226 kb on + strand, within GFF4129 at 34.226 kb on + strand, within GFF4129 at 34.226 kb on + strand, within GFF4129 at 34.226 kb on + strand, within GFF4129 at 34.226 kb on + strand, within GFF4129 at 34.227 kb on - strand, within GFF4129 at 34.227 kb on - strand, within GFF4129 at 34.247 kb on + strand, within GFF4129 at 34.364 kb on + strand, within GFF4129 at 34.364 kb on + strand, within GFF4129 at 34.607 kb on + strand, within GFF4129 at 34.608 kb on - strand, within GFF4129 at 34.800 kb on - strand at 34.987 kb on + strand at 34.988 kb on - strand at 35.039 kb on - strand at 35.198 kb on - strand, within GFF4130 at 35.480 kb on - strand, within GFF4130 at 35.864 kb on - strand, within GFF4130 at 36.028 kb on + strand, within GFF4130 at 36.028 kb on + strand, within GFF4130 at 36.028 kb on + strand, within GFF4130 at 36.028 kb on + strand, within GFF4130 at 36.028 kb on + strand, within GFF4130 at 36.029 kb on - strand, within GFF4130 at 36.563 kb on + strand at 36.563 kb on + strand at 36.843 kb on - strand, within GFF4131 at 36.843 kb on - strand, within GFF4131 at 36.959 kb on + strand, within GFF4131 at 36.959 kb on + strand, within GFF4131 at 37.077 kb on - strand, within GFF4131 at 37.127 kb on + strand, within GFF4131 at 37.127 kb on + strand, within GFF4131 at 37.127 kb on + strand, within GFF4131 at 37.128 kb on - strand, within GFF4131 at 37.256 kb on + strand, within GFF4131
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 34,226 + GFF4129 0.57 -0.8 34,226 + GFF4129 0.57 -1.0 34,226 + GFF4129 0.57 +2.1 34,226 + GFF4129 0.57 +0.0 34,226 + GFF4129 0.57 -2.1 34,227 - GFF4129 0.57 -2.2 34,227 - GFF4129 0.57 -0.2 34,247 + GFF4129 0.58 -1.2 34,364 + GFF4129 0.65 -2.5 34,364 + GFF4129 0.65 -0.5 34,607 + GFF4129 0.80 -1.9 34,608 - GFF4129 0.80 -1.7 34,800 - +1.3 34,987 + +0.7 34,988 - -0.3 35,039 - +0.5 35,198 - GFF4130 0.17 +0.7 35,480 - GFF4130 0.36 -1.9 35,864 - GFF4130 0.61 -1.3 36,028 + GFF4130 0.72 +0.4 36,028 + GFF4130 0.72 -3.1 36,028 + GFF4130 0.72 -0.9 36,028 + GFF4130 0.72 -2.5 36,028 + GFF4130 0.72 -1.3 36,029 - GFF4130 0.72 -0.9 36,563 + -2.0 36,563 + -0.5 36,843 - GFF4131 0.22 -3.0 36,843 - GFF4131 0.22 +2.3 36,959 + GFF4131 0.29 -1.7 36,959 + GFF4131 0.29 -1.8 37,077 - GFF4131 0.36 -0.6 37,127 + GFF4131 0.39 -0.2 37,127 + GFF4131 0.39 -1.2 37,127 + GFF4131 0.39 +0.4 37,128 - GFF4131 0.39 -0.5 37,256 + GFF4131 0.47 +2.3
Or see this region's nucleotide sequence