Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3979 and GFF3980 overlap by 4 nucleotides GFF3980 and GFF3981 are separated by 43 nucleotides GFF3981 and GFF3982 are separated by 34 nucleotides
GFF3979 - 3-phenylpropionate dioxygenase alpha subunit (EC 1.14.1.-), at 182,522 to 183,847
GFF3979
GFF3980 - 3-phenylpropionate dioxygenase beta subunit (EC 1.14.1.-), at 183,844 to 184,308
GFF3980
GFF3981 - ABC-type branched-chain amino acid transport systems, periplasmic component, at 184,352 to 185,515
GFF3981
GFF3982 - Branched-chain amino acid ABC transporter, permease protein LivH (TC 3.A.1.4.1), at 185,550 to 186,605
GFF3982
Position (kb) 184
185
186 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 183.369 kb on - strand, within GFF3979 at 183.386 kb on + strand, within GFF3979 at 183.435 kb on + strand, within GFF3979 at 183.435 kb on + strand, within GFF3979 at 183.583 kb on - strand, within GFF3979 at 183.714 kb on + strand, within GFF3979 at 183.714 kb on + strand, within GFF3979 at 183.941 kb on - strand, within GFF3980 at 184.156 kb on + strand, within GFF3980 at 184.347 kb on - strand at 184.526 kb on + strand, within GFF3981 at 184.527 kb on - strand, within GFF3981 at 184.844 kb on + strand, within GFF3981 at 184.844 kb on + strand, within GFF3981 at 184.880 kb on + strand, within GFF3981 at 184.881 kb on - strand, within GFF3981 at 185.070 kb on - strand, within GFF3981 at 185.085 kb on - strand, within GFF3981 at 185.198 kb on + strand, within GFF3981 at 185.198 kb on + strand, within GFF3981 at 185.198 kb on + strand, within GFF3981 at 185.423 kb on + strand at 185.423 kb on + strand at 185.423 kb on + strand at 185.423 kb on + strand at 185.424 kb on - strand at 185.424 kb on - strand at 185.424 kb on - strand at 185.608 kb on - strand at 186.300 kb on + strand, within GFF3982 at 186.363 kb on + strand, within GFF3982 at 186.363 kb on + strand, within GFF3982 at 186.363 kb on + strand, within GFF3982 at 186.363 kb on + strand, within GFF3982 at 186.363 kb on + strand, within GFF3982 at 186.363 kb on + strand, within GFF3982 at 186.364 kb on - strand, within GFF3982 at 186.364 kb on - strand, within GFF3982 at 186.367 kb on - strand, within GFF3982
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 183,369 - GFF3979 0.64 -0.3 183,386 + GFF3979 0.65 -0.1 183,435 + GFF3979 0.69 -1.2 183,435 + GFF3979 0.69 -0.8 183,583 - GFF3979 0.80 -2.8 183,714 + GFF3979 0.90 -1.1 183,714 + GFF3979 0.90 +0.0 183,941 - GFF3980 0.21 +1.7 184,156 + GFF3980 0.67 +0.1 184,347 - -0.9 184,526 + GFF3981 0.15 -0.8 184,527 - GFF3981 0.15 +0.6 184,844 + GFF3981 0.42 +0.9 184,844 + GFF3981 0.42 -0.3 184,880 + GFF3981 0.45 -0.4 184,881 - GFF3981 0.45 -0.8 185,070 - GFF3981 0.62 +1.0 185,085 - GFF3981 0.63 -1.5 185,198 + GFF3981 0.73 -0.3 185,198 + GFF3981 0.73 -0.7 185,198 + GFF3981 0.73 +1.7 185,423 + -0.8 185,423 + -0.9 185,423 + +0.2 185,423 + -0.6 185,424 - +1.2 185,424 - -1.1 185,424 - +0.4 185,608 - -0.4 186,300 + GFF3982 0.71 +0.4 186,363 + GFF3982 0.77 +0.8 186,363 + GFF3982 0.77 +3.2 186,363 + GFF3982 0.77 +1.4 186,363 + GFF3982 0.77 +0.7 186,363 + GFF3982 0.77 -1.6 186,363 + GFF3982 0.77 +1.2 186,364 - GFF3982 0.77 +0.2 186,364 - GFF3982 0.77 -0.3 186,367 - GFF3982 0.77 +0.7
Or see this region's nucleotide sequence