Strain Fitness in Variovorax sp. SCN45 around GFF3936

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
138,841	+		GFF3935	0.48	+0.7
138,841	+		GFF3935	0.48	+1.4
138,841	+		GFF3935	0.48	-0.9
138,841	+		GFF3935	0.48	-0.0
138,841	+		GFF3935	0.48	-4.0
138,842	-		GFF3935	0.48	-1.3
138,842	-		GFF3935	0.48	-0.2
138,842	-		GFF3935	0.48	-0.6
138,842	-		GFF3935	0.48	-0.3
138,842	-		GFF3935	0.48	+0.4
138,842	-		GFF3935	0.48	+2.2
138,842	-		GFF3935	0.48	+1.6
138,842	-		GFF3935	0.48	-1.7
138,842	-		GFF3935	0.48	-3.7
138,862	+		GFF3935	0.49	-0.0
138,862	+		GFF3935	0.49	+0.8
138,863	-		GFF3935	0.49	-2.2
138,863	-		GFF3935	0.49	-3.3
138,863	-		GFF3935	0.49	-3.3
138,965	+		GFF3935	0.57	+2.2
138,965	+		GFF3935	0.57	+1.1
138,966	-		GFF3935	0.57	+2.2
139,144	+		GFF3935	0.71	-1.7
139,145	-		GFF3935	0.71	+0.0
139,228	+		GFF3935	0.77	+1.5
139,228	+		GFF3935	0.77	+0.4
139,228	+		GFF3935	0.77	+0.9
139,228	+		GFF3935	0.77	-0.3
139,228	+		GFF3935	0.77	-2.0
139,229	-		GFF3935	0.78	+0.1
139,229	-		GFF3935	0.78	-1.3
139,229	-		GFF3935	0.78	+0.4
139,229	-		GFF3935	0.78	-0.9
139,364	-		GFF3935	0.88	-1.9
139,364	-		GFF3935	0.88	-1.9
139,364	-		GFF3935	0.88	-1.9
139,464	+				+0.0
139,465	-				-0.6
139,465	-				-1.2
139,721	+				+0.0
139,721	+				+0.9
139,722	-				+0.9
139,722	-				-0.1
139,722	-				+1.0
139,722	-				-0.8
139,722	-				+0.9
140,166	-		GFF3936	0.37	-0.6
140,246	+		GFF3936	0.42	+2.3
140,246	+		GFF3936	0.42	+0.1
140,247	-		GFF3936	0.42	-1.2
140,259	+		GFF3936	0.43	+0.5
140,259	+		GFF3936	0.43	-1.2
140,259	+		GFF3936	0.43	-1.6
140,259	+		GFF3936	0.43	+0.8
140,259	+		GFF3936	0.43	+0.9
140,259	+		GFF3936	0.43	-1.3
140,260	-		GFF3936	0.43	+0.0
140,260	-		GFF3936	0.43	-4.2
140,318	+		GFF3936	0.46	-2.5
140,319	-		GFF3936	0.46	-0.3
140,319	-		GFF3936	0.46	-0.5
140,319	-		GFF3936	0.46	-0.0
140,319	-		GFF3936	0.46	-1.6
140,319	-		GFF3936	0.46	+0.3
140,319	-		GFF3936	0.46	+1.3
140,372	+		GFF3936	0.50	+1.1
140,372	+		GFF3936	0.50	-0.6
140,372	+		GFF3936	0.50	+0.7
140,372	+		GFF3936	0.50	-0.5
140,372	+		GFF3936	0.50	-2.3
140,373	-		GFF3936	0.50	+0.1
140,373	-		GFF3936	0.50	-0.1
140,373	-		GFF3936	0.50	-0.5
140,373	-		GFF3936	0.50	+0.3
140,373	-		GFF3936	0.50	-1.2
140,373	-		GFF3936	0.50	-2.4
140,798	+		GFF3936	0.76	-2.0
140,900	+		GFF3936	0.82	-1.2
140,900	+		GFF3936	0.82	+0.7
141,029	+				-0.5
141,029	+				-0.1
141,029	+				-0.1
141,029	+				-0.5
141,029	+				-1.9
141,029	+				+0.5
141,029	+				-0.5
141,029	+				-0.5
141,029	+				-2.8
141,029	+				-0.1
141,029	+				-0.0
141,029	+				+1.5
141,030	-				+0.3
141,030	-				-1.4
141,030	-				-0.1
141,030	-				+3.2
141,030	-				-0.3
141,030	-				-0.2
141,030	-				-1.6
141,030	-				-3.3
141,030	-				-0.6
141,030	-				+0.4
141,030	-				-2.5
141,030	-				+0.6
141,098	+				-1.0
141,098	+				-0.1
141,098	+				-1.3
141,098	+				-2.1
141,099	-				-2.6
141,099	-				-1.7
141,099	-				-1.8
141,099	-				+0.8
141,364	+		GFF3937	0.17	+1.3
141,364	+		GFF3937	0.17	+0.7
141,365	-		GFF3937	0.17	+0.7
141,365	-		GFF3937	0.17	-1.6
141,527	-		GFF3937	0.33	-1.2
141,632	+		GFF3937	0.44	+1.0
141,680	-		GFF3937	0.49	+0.7
142,158	+				-0.3
142,159	-				+1.2