Strain Fitness in Variovorax sp. SCN45 around GFF3911

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
116,254	+		GFF3910	0.45	-3.3
116,254	+		GFF3910	0.45	-1.8
116,254	+		GFF3910	0.45	-1.9
116,275	+		GFF3910	0.47	-0.2
116,275	+		GFF3910	0.47	+0.5
116,276	-		GFF3910	0.47	+0.7
116,276	-		GFF3910	0.47	+1.8
116,276	-		GFF3910	0.47	-0.1
116,276	-		GFF3910	0.47	+1.3
116,434	+		GFF3910	0.58	+3.2
116,434	+		GFF3910	0.58	+0.2
116,435	-		GFF3910	0.58	+3.1
116,435	-		GFF3910	0.58	+0.7
116,481	+		GFF3910	0.61	-0.6
116,581	+		GFF3910	0.68	-1.2
116,624	+		GFF3910	0.71	-0.0
116,624	+		GFF3910	0.71	-1.7
116,624	+		GFF3910	0.71	-0.8
116,624	+		GFF3910	0.71	-0.9
116,624	+		GFF3910	0.71	-0.6
116,625	-		GFF3910	0.71	-0.8
116,625	-		GFF3910	0.71	-0.9
116,625	-		GFF3910	0.71	-1.8
116,625	-		GFF3910	0.71	-1.6
116,625	-		GFF3910	0.71	-1.2
116,626	+		GFF3910	0.71	-0.9
116,626	+		GFF3910	0.71	+0.2
116,626	+		GFF3910	0.71	-0.9
116,626	+		GFF3910	0.71	-0.5
116,627	-		GFF3910	0.71	+2.2
116,627	-		GFF3910	0.71	+0.9
116,627	-		GFF3910	0.71	-0.4
116,794	+		GFF3910	0.82	-1.6
116,794	+		GFF3910	0.82	-0.9
116,794	+		GFF3910	0.82	-1.3
116,988	+				+1.4
117,101	-				-2.9
117,360	-		GFF3911	0.51	-0.1
117,473	+		GFF3911	0.75	+0.2
117,473	+		GFF3911	0.75	-2.3
117,473	+		GFF3911	0.75	+0.1
117,473	+		GFF3911	0.75	-0.3
117,474	-		GFF3911	0.76	+0.3
117,474	-		GFF3911	0.76	-3.9
117,474	-		GFF3911	0.76	+0.2
117,474	-		GFF3911	0.76	-1.0
117,597	+				-1.3
117,597	+				-1.1
117,597	+				-1.5
117,597	+				-0.9
117,597	+				+0.8
117,597	+				+0.9
117,597	+				+2.2
117,597	+				-1.3
117,597	+				+0.1
117,598	-				-0.6
117,598	-				-0.1
117,598	-				-1.5
117,598	-				+1.2
117,598	-				+0.7
117,598	-				-1.3
117,598	-				+0.8
117,598	-				-0.1
117,598	-				-2.0
117,598	-				-0.9
117,598	-				+2.2
117,598	-				-2.9
117,598	-				-2.3
117,598	-				-2.3
117,598	-				-1.9
117,598	-				+0.7
117,601	+				-1.9
117,601	+				-1.6
117,601	+				+0.7
117,611	+				-0.5
117,721	+				-0.7
117,721	+				-2.2
117,722	-				+0.5
117,722	-				-2.5
117,722	-				-2.2
117,722	-				-2.9
117,722	-				-0.4
117,815	+				-2.1
117,815	+				-1.0
117,815	+				+1.0
117,815	+				-0.8
117,815	+				+0.7
117,815	+				+0.2
117,815	+				-4.5
117,815	+				+0.9
117,815	+				+0.7
117,815	+				-1.1
117,815	+				+1.2
117,815	+				-0.0
117,815	+				+2.0
117,816	-				-0.5
117,816	-				-0.6
117,816	-				-1.1
118,461	-		GFF3912	0.86	+0.3
118,461	-		GFF3912	0.86	-1.3
118,496	+				+0.7
118,496	+				-1.1
118,497	-				-1.5