Strain Fitness in Variovorax sp. SCN45 around GFF3904

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
104,661	+				-1.2
104,661	+				+0.6
104,661	+				+0.3
104,662	-				-0.3
104,662	-				-1.8
104,662	-				+0.5
104,662	-				-0.5
104,662	-				-3.0
104,662	-				-1.5
105,112	-		GFF3903	0.53	-0.8
105,228	+		GFF3903	0.65	-2.3
105,228	+		GFF3903	0.65	-0.3
105,229	-		GFF3903	0.65	-1.5
105,229	-		GFF3903	0.65	-0.8
105,229	-		GFF3903	0.65	-1.4
105,421	+		GFF3903	0.84	-3.2
105,421	+		GFF3903	0.84	+2.2
105,421	+		GFF3903	0.84	+0.8
105,421	+		GFF3903	0.84	-2.4
105,421	+		GFF3903	0.84	+1.2
105,422	-		GFF3903	0.84	+0.2
105,422	-		GFF3903	0.84	+1.1
105,422	-		GFF3903	0.84	-0.6
105,422	-		GFF3903	0.84	+0.2
105,486	+				+2.5
105,487	-				-0.6
105,487	-				-1.9
105,591	+				-1.3
105,961	+		GFF3904	0.60	-1.6
105,961	+		GFF3904	0.60	+1.2
105,962	-		GFF3904	0.60	-0.1
106,186	+				+1.2
106,186	+				+2.2
106,186	+				-3.0
106,187	-				-1.6
106,187	-				+1.2
106,187	-				-1.2
106,187	-				-0.6
106,187	-				+0.5
106,187	-				+0.2
106,192	+				-1.9
106,281	+				-1.7
106,281	+				-4.0
106,281	+				+0.4
106,282	-				+1.4
106,420	-				+2.2
106,467	+				-2.5
106,971	+		GFF3905	0.27	-1.9
107,115	+		GFF3905	0.33	-1.9
107,116	-		GFF3905	0.33	+0.4