Strain Fitness in Variovorax sp. SCN45 around GFF3824

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
12,396	+		GFF3823	0.43	+2.2
12,396	+		GFF3823	0.43	-0.4
12,396	+		GFF3823	0.43	-2.3
12,397	-		GFF3823	0.43	-1.3
12,397	-		GFF3823	0.43	-0.8
12,397	-		GFF3823	0.43	-0.3
12,397	-		GFF3823	0.43	-0.3
12,483	+		GFF3823	0.49	-1.5
12,483	+		GFF3823	0.49	+1.2
12,483	+		GFF3823	0.49	+3.0
12,483	+		GFF3823	0.49	+0.8
12,483	+		GFF3823	0.49	-2.7
12,483	+		GFF3823	0.49	+1.3
12,484	-		GFF3823	0.49	-1.3
12,484	-		GFF3823	0.49	+1.2
12,484	-		GFF3823	0.49	+0.2
12,492	+		GFF3823	0.49	-1.2
12,492	+		GFF3823	0.49	+1.2
12,492	+		GFF3823	0.49	+2.0
12,493	-		GFF3823	0.50	-0.5
12,493	-		GFF3823	0.50	+1.0
12,507	+		GFF3823	0.50	+1.2
12,508	-		GFF3823	0.51	-0.4
12,508	-		GFF3823	0.51	+1.2
12,508	-		GFF3823	0.51	-1.2
12,534	+		GFF3823	0.52	+1.7
12,535	-		GFF3823	0.52	+0.1
12,535	-		GFF3823	0.52	-0.7
12,535	-		GFF3823	0.52	-2.4
12,546	+		GFF3823	0.53	-1.9
12,546	+		GFF3823	0.53	-0.7
12,546	+		GFF3823	0.53	+1.2
12,546	+		GFF3823	0.53	+0.2
12,546	+		GFF3823	0.53	-1.2
12,547	-		GFF3823	0.53	-0.8
12,547	-		GFF3823	0.53	+1.0
12,547	-		GFF3823	0.53	-1.2
12,547	-		GFF3823	0.53	+1.7
12,547	-		GFF3823	0.53	+2.7
12,547	-		GFF3823	0.53	-1.5
12,547	-		GFF3823	0.53	+0.2
12,591	+		GFF3823	0.56	+2.8
12,609	+		GFF3823	0.57	-0.6
12,609	+		GFF3823	0.57	-1.0
12,609	+		GFF3823	0.57	-0.7
12,609	+		GFF3823	0.57	-2.1
12,609	+		GFF3823	0.57	-0.3
12,609	+		GFF3823	0.57	-2.3
12,654	+		GFF3823	0.60	+0.5
12,654	+		GFF3823	0.60	+0.6
12,654	+		GFF3823	0.60	-0.9
12,654	+		GFF3823	0.60	+0.8
12,654	+		GFF3823	0.60	-1.6
12,655	-		GFF3823	0.61	-1.7
12,655	-		GFF3823	0.61	-2.5
12,666	+		GFF3823	0.61	+0.1
12,666	+		GFF3823	0.61	-2.4
12,666	+		GFF3823	0.61	-2.4
12,666	+		GFF3823	0.61	+0.7
12,666	+		GFF3823	0.61	-1.4
12,667	-		GFF3823	0.61	-1.5
12,667	-		GFF3823	0.61	+1.7
12,667	-		GFF3823	0.61	-1.1
12,667	-		GFF3823	0.61	+3.0
12,855	+		GFF3823	0.74	-0.3
12,855	+		GFF3823	0.74	-1.1
12,855	+		GFF3823	0.74	+0.0
12,856	-		GFF3823	0.74	+0.3
12,856	-		GFF3823	0.74	-0.1
12,856	-		GFF3823	0.74	-0.1
12,856	-		GFF3823	0.74	+2.6
12,885	+		GFF3823	0.76	+0.4
12,885	+		GFF3823	0.76	-0.2
13,089	+				-0.1
13,089	+				+0.9
13,089	+				-0.9
13,089	+				+1.8
13,089	+				-1.3
13,090	-				-1.1
13,090	-				+0.6
13,090	-				-0.3
13,090	-				+2.3
13,090	-				+0.6
13,092	+				+0.2
13,092	+				-0.6
13,092	+				+1.7
13,092	+				-2.4
13,093	-				-0.6
13,227	+				-1.6
13,227	+				+0.6
13,227	+				-1.0
13,227	+				-0.6
13,227	+				-0.3
13,228	-				-0.7
13,228	-				+0.4
13,228	-				+2.2
13,228	-				-2.1
14,681	-				+0.2
14,681	-				-1.8
14,701	+				+2.2
14,702	-				-0.6
14,702	-				-2.6
14,702	-				-1.8
14,702	-				+0.7
15,026	-		GFF3825	0.24	-1.2
15,026	-		GFF3825	0.24	+2.6
15,064	+		GFF3825	0.27	+0.5
15,064	+		GFF3825	0.27	+0.5
15,064	+		GFF3825	0.27	-1.5
15,064	+		GFF3825	0.27	-0.1
15,065	-		GFF3825	0.27	+1.1
15,065	-		GFF3825	0.27	+1.5
15,406	+		GFF3825	0.62	+0.7