Strain Fitness in Variovorax sp. SCN45 around GFF3778

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3777 and GFF3778 are separated by 200 nucleotidesGFF3778 and GFF3779 are separated by 164 nucleotidesGFF3779 and GFF3780 are separated by 54 nucleotides GFF3777 - Prolyl endopeptidase (EC 3.4.21.26), at 268,032 to 270,083 GFF3777 GFF3778 - Wax ester synthase/acyl-CoA:diacylglycerol acyltransferase, at 270,284 to 271,984 GFF3778 GFF3779 - hypothetical protein, at 272,149 to 272,706 GFF3779 GFF3780 - hypothetical protein, at 272,761 to 273,234 GFF3780 Position (kb) 270 271 272Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 269.440 kb on + strand, within GFF3777at 269.440 kb on + strand, within GFF3777at 269.545 kb on + strand, within GFF3777at 269.546 kb on - strand, within GFF3777at 269.546 kb on - strand, within GFF3777at 269.695 kb on + strand, within GFF3777at 269.804 kb on - strand, within GFF3777at 269.867 kb on - strand, within GFF3777at 269.867 kb on - strand, within GFF3777at 269.969 kb on - strandat 269.969 kb on - strandat 269.969 kb on - strandat 270.095 kb on - strandat 270.210 kb on - strandat 270.386 kb on + strandat 270.387 kb on - strandat 270.401 kb on + strandat 270.402 kb on - strandat 270.530 kb on + strand, within GFF3778at 270.530 kb on + strand, within GFF3778at 270.530 kb on + strand, within GFF3778at 270.587 kb on + strand, within GFF3778at 270.587 kb on + strand, within GFF3778at 270.587 kb on + strand, within GFF3778at 270.587 kb on + strand, within GFF3778at 270.588 kb on - strand, within GFF3778at 270.588 kb on - strand, within GFF3778at 270.588 kb on - strand, within GFF3778at 270.588 kb on - strand, within GFF3778at 270.588 kb on - strand, within GFF3778at 270.588 kb on - strand, within GFF3778at 270.588 kb on - strand, within GFF3778at 270.683 kb on + strand, within GFF3778at 270.683 kb on + strand, within GFF3778at 270.810 kb on - strand, within GFF3778at 270.867 kb on - strand, within GFF3778at 270.867 kb on - strand, within GFF3778at 271.067 kb on + strand, within GFF3778at 271.067 kb on + strand, within GFF3778at 271.067 kb on + strand, within GFF3778at 271.067 kb on + strand, within GFF3778at 271.067 kb on + strand, within GFF3778at 271.067 kb on + strand, within GFF3778at 271.067 kb on + strand, within GFF3778at 271.068 kb on - strand, within GFF3778at 271.068 kb on - strand, within GFF3778at 271.068 kb on - strand, within GFF3778at 271.139 kb on + strand, within GFF3778at 271.139 kb on + strand, within GFF3778at 271.140 kb on - strand, within GFF3778at 271.321 kb on + strand, within GFF3778at 271.496 kb on + strand, within GFF3778at 271.497 kb on - strand, within GFF3778at 271.497 kb on - strand, within GFF3778at 271.523 kb on + strand, within GFF3778at 271.523 kb on + strand, within GFF3778at 271.523 kb on + strand, within GFF3778at 271.523 kb on + strand, within GFF3778at 271.524 kb on - strand, within GFF3778at 271.524 kb on - strand, within GFF3778at 271.524 kb on - strand, within GFF3778at 271.524 kb on - strand, within GFF3778at 271.524 kb on - strand, within GFF3778at 271.580 kb on + strand, within GFF3778at 271.580 kb on + strand, within GFF3778at 271.580 kb on + strand, within GFF3778at 271.580 kb on + strand, within GFF3778at 271.580 kb on + strand, within GFF3778at 271.581 kb on - strand, within GFF3778at 271.581 kb on - strand, within GFF3778at 271.581 kb on - strand, within GFF3778at 271.581 kb on - strand, within GFF3778at 271.581 kb on - strand, within GFF3778at 271.581 kb on - strand, within GFF3778at 271.652 kb on + strand, within GFF3778at 271.652 kb on + strand, within GFF3778at 271.652 kb on + strand, within GFF3778at 271.653 kb on - strand, within GFF3778at 271.653 kb on - strand, within GFF3778at 271.653 kb on - strand, within GFF3778at 271.653 kb on - strand, within GFF3778at 271.683 kb on - strand, within GFF3778at 271.852 kb on - strandat 272.032 kb on - strandat 272.032 kb on - strandat 272.048 kb on + strandat 272.063 kb on - strandat 272.081 kb on + strandat 272.081 kb on + strandat 272.081 kb on + strandat 272.081 kb on + strandat 272.082 kb on - strandat 272.082 kb on - strandat 272.082 kb on - strandat 272.082 kb on - strandat 272.082 kb on - strandat 272.200 kb on + strandat 272.201 kb on - strandat 272.496 kb on + strand, within GFF3779at 272.497 kb on - strand, within GFF3779

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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269,440 + GFF3777 0.69 -1.8
269,440 + GFF3777 0.69 -1.7
269,545 + GFF3777 0.74 +0.9
269,546 - GFF3777 0.74 +0.5
269,546 - GFF3777 0.74 -0.9
269,695 + GFF3777 0.81 +0.9
269,804 - GFF3777 0.86 -0.3
269,867 - GFF3777 0.89 -1.5
269,867 - GFF3777 0.89 -2.6
269,969 - +1.1
269,969 - -1.4
269,969 - -3.6
270,095 - -0.7
270,210 - -0.1
270,386 + -0.5
270,387 - -3.5
270,401 + -1.1
270,402 - -3.0
270,530 + GFF3778 0.14 +0.3
270,530 + GFF3778 0.14 -3.9
270,530 + GFF3778 0.14 +1.5
270,587 + GFF3778 0.18 -2.9
270,587 + GFF3778 0.18 +0.2
270,587 + GFF3778 0.18 -1.4
270,587 + GFF3778 0.18 -0.2
270,588 - GFF3778 0.18 -1.0
270,588 - GFF3778 0.18 -1.6
270,588 - GFF3778 0.18 -2.6
270,588 - GFF3778 0.18 -0.2
270,588 - GFF3778 0.18 -3.0
270,588 - GFF3778 0.18 +0.2
270,588 - GFF3778 0.18 -1.0
270,683 + GFF3778 0.23 -2.1
270,683 + GFF3778 0.23 +1.7
270,810 - GFF3778 0.31 +0.2
270,867 - GFF3778 0.34 -2.2
270,867 - GFF3778 0.34 -1.7
271,067 + GFF3778 0.46 +0.2
271,067 + GFF3778 0.46 +1.0
271,067 + GFF3778 0.46 +0.5
271,067 + GFF3778 0.46 -0.5
271,067 + GFF3778 0.46 +0.2
271,067 + GFF3778 0.46 +0.3
271,067 + GFF3778 0.46 -0.8
271,068 - GFF3778 0.46 -0.5
271,068 - GFF3778 0.46 -0.2
271,068 - GFF3778 0.46 +0.2
271,139 + GFF3778 0.50 -1.2
271,139 + GFF3778 0.50 -2.5
271,140 - GFF3778 0.50 -0.2
271,321 + GFF3778 0.61 -0.5
271,496 + GFF3778 0.71 -1.2
271,497 - GFF3778 0.71 -3.9
271,497 - GFF3778 0.71 +0.7
271,523 + GFF3778 0.73 +0.1
271,523 + GFF3778 0.73 -2.4
271,523 + GFF3778 0.73 +0.2
271,523 + GFF3778 0.73 +1.6
271,524 - GFF3778 0.73 -1.2
271,524 - GFF3778 0.73 +0.5
271,524 - GFF3778 0.73 +0.2
271,524 - GFF3778 0.73 -3.5
271,524 - GFF3778 0.73 -1.5
271,580 + GFF3778 0.76 -0.2
271,580 + GFF3778 0.76 -1.2
271,580 + GFF3778 0.76 -1.8
271,580 + GFF3778 0.76 -1.9
271,580 + GFF3778 0.76 -1.2
271,581 - GFF3778 0.76 -1.2
271,581 - GFF3778 0.76 +0.3
271,581 - GFF3778 0.76 -0.8
271,581 - GFF3778 0.76 -1.0
271,581 - GFF3778 0.76 -1.4
271,581 - GFF3778 0.76 -0.3
271,652 + GFF3778 0.80 +0.9
271,652 + GFF3778 0.80 +0.9
271,652 + GFF3778 0.80 +0.1
271,653 - GFF3778 0.80 -1.5
271,653 - GFF3778 0.80 +0.3
271,653 - GFF3778 0.80 +0.3
271,653 - GFF3778 0.80 -2.1
271,683 - GFF3778 0.82 -1.8
271,852 - -0.1
272,032 - -2.3
272,032 - -3.0
272,048 + -1.8
272,063 - -3.0
272,081 + +0.9
272,081 + +2.5
272,081 + -1.2
272,081 + +0.8
272,082 - -0.0
272,082 - +1.9
272,082 - -1.5
272,082 - -1.6
272,082 - +1.4
272,200 + -2.0
272,201 - -0.7
272,496 + GFF3779 0.62 -0.7
272,497 - GFF3779 0.62 -1.5

Or see this region's nucleotide sequence