Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3771 and GFF3772 overlap by 4 nucleotides GFF3772 and GFF3773 are separated by 10 nucleotides GFF3773 and GFF3774 overlap by 4 nucleotides
GFF3771 - no description, at 262,941 to 263,495
GFF3771
GFF3772 - Arginase (EC 3.5.3.1), at 263,492 to 264,412
GFF3772
GFF3773 - Fatty acid hydroxylase family (carotene hydroxylase/sterol desaturase), at 264,423 to 265,403
GFF3773
GFF3774 - hypothetical protein, at 265,400 to 266,797
GFF3774
Position (kb) 264
265
266 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 263.445 kb on + strand at 263.445 kb on + strand at 263.446 kb on - strand at 263.454 kb on + strand at 263.454 kb on + strand at 263.454 kb on + strand at 263.454 kb on + strand at 263.454 kb on + strand at 263.454 kb on + strand at 263.454 kb on + strand at 263.455 kb on - strand at 263.455 kb on - strand at 263.455 kb on - strand at 263.455 kb on - strand at 263.493 kb on + strand at 263.655 kb on + strand, within GFF3772 at 263.656 kb on - strand, within GFF3772 at 264.380 kb on + strand at 264.658 kb on + strand, within GFF3773 at 264.658 kb on + strand, within GFF3773 at 264.658 kb on + strand, within GFF3773 at 264.659 kb on - strand, within GFF3773 at 264.836 kb on - strand, within GFF3773 at 264.985 kb on + strand, within GFF3773 at 264.985 kb on + strand, within GFF3773 at 264.985 kb on + strand, within GFF3773 at 264.985 kb on + strand, within GFF3773 at 264.986 kb on - strand, within GFF3773 at 264.986 kb on - strand, within GFF3773 at 264.986 kb on - strand, within GFF3773 at 264.993 kb on + strand, within GFF3773 at 264.993 kb on + strand, within GFF3773 at 264.993 kb on + strand, within GFF3773 at 264.994 kb on - strand, within GFF3773 at 264.994 kb on - strand, within GFF3773 at 264.994 kb on - strand, within GFF3773 at 264.994 kb on - strand, within GFF3773 at 264.994 kb on - strand, within GFF3773 at 265.258 kb on + strand, within GFF3773 at 265.258 kb on + strand, within GFF3773 at 265.258 kb on + strand, within GFF3773 at 265.258 kb on + strand, within GFF3773 at 265.258 kb on + strand, within GFF3773 at 265.258 kb on + strand, within GFF3773 at 265.259 kb on - strand, within GFF3773 at 265.259 kb on - strand, within GFF3773 at 265.259 kb on - strand, within GFF3773 at 265.259 kb on - strand, within GFF3773 at 265.331 kb on - strand at 265.457 kb on - strand at 265.578 kb on + strand, within GFF3774 at 265.579 kb on - strand, within GFF3774 at 265.797 kb on + strand, within GFF3774 at 266.354 kb on + strand, within GFF3774 at 266.355 kb on - strand, within GFF3774 at 266.355 kb on - strand, within GFF3774
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 263,445 + +0.9 263,445 + -0.1 263,446 - -2.0 263,454 + -3.0 263,454 + -1.3 263,454 + -0.7 263,454 + -2.0 263,454 + -2.5 263,454 + +2.7 263,454 + -1.8 263,455 - -2.0 263,455 - -0.0 263,455 - +0.2 263,455 - +0.8 263,493 + -0.2 263,655 + GFF3772 0.18 -0.4 263,656 - GFF3772 0.18 -1.2 264,380 + -1.4 264,658 + GFF3773 0.24 -2.3 264,658 + GFF3773 0.24 +0.2 264,658 + GFF3773 0.24 +1.2 264,659 - GFF3773 0.24 +0.5 264,836 - GFF3773 0.42 +0.4 264,985 + GFF3773 0.57 +0.9 264,985 + GFF3773 0.57 +1.1 264,985 + GFF3773 0.57 +0.5 264,985 + GFF3773 0.57 +1.1 264,986 - GFF3773 0.57 +0.9 264,986 - GFF3773 0.57 -1.9 264,986 - GFF3773 0.57 -3.0 264,993 + GFF3773 0.58 +0.9 264,993 + GFF3773 0.58 -3.3 264,993 + GFF3773 0.58 +1.3 264,994 - GFF3773 0.58 -0.2 264,994 - GFF3773 0.58 +0.6 264,994 - GFF3773 0.58 -2.0 264,994 - GFF3773 0.58 -0.5 264,994 - GFF3773 0.58 -1.8 265,258 + GFF3773 0.85 -1.6 265,258 + GFF3773 0.85 -2.2 265,258 + GFF3773 0.85 +1.2 265,258 + GFF3773 0.85 -1.7 265,258 + GFF3773 0.85 -0.5 265,258 + GFF3773 0.85 -0.4 265,259 - GFF3773 0.85 -0.6 265,259 - GFF3773 0.85 -1.1 265,259 - GFF3773 0.85 -2.2 265,259 - GFF3773 0.85 +0.9 265,331 - +0.4 265,457 - -1.4 265,578 + GFF3774 0.13 -1.4 265,579 - GFF3774 0.13 -0.4 265,797 + GFF3774 0.28 -2.0 266,354 + GFF3774 0.68 +0.8 266,355 - GFF3774 0.68 -1.0 266,355 - GFF3774 0.68 -3.0
Or see this region's nucleotide sequence