Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF376 and GFF377 overlap by 8 nucleotides GFF377 and GFF378 are separated by 140 nucleotides GFF378 and GFF379 are separated by 7 nucleotides
GFF376 - Carbamoyl-phosphate synthase large chain (EC 6.3.5.5), at 405,737 to 408,985
GFF376
GFF377 - Carbamoyl-phosphate synthase small chain (EC 6.3.5.5), at 408,978 to 410,177
GFF377
GFF378 - RNA (nucleoside 2'-O)-methyltransferase, at 410,318 to 411,103
GFF378
GFF379 - Ribonuclease HII (EC 3.1.26.4), at 411,111 to 411,821
GFF379
Position (kb) 408
409
410
411 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 410.196 kb on - strand at 410.196 kb on - strand at 410.196 kb on - strand at 410.300 kb on + strand at 410.301 kb on - strand at 410.301 kb on - strand at 410.301 kb on - strand at 410.301 kb on - strand at 410.319 kb on + strand at 410.319 kb on + strand at 410.319 kb on + strand at 410.319 kb on + strand at 410.319 kb on + strand at 410.319 kb on + strand at 410.320 kb on - strand at 410.320 kb on - strand at 410.320 kb on - strand at 410.320 kb on - strand at 410.320 kb on - strand at 410.320 kb on - strand at 410.320 kb on - strand at 410.320 kb on - strand at 410.588 kb on + strand, within GFF378 at 410.588 kb on + strand, within GFF378 at 410.588 kb on + strand, within GFF378 at 410.589 kb on - strand, within GFF378 at 410.589 kb on - strand, within GFF378 at 411.175 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 410,196 - +0.8 410,196 - -3.6 410,196 - -1.7 410,300 + -1.0 410,301 - -1.2 410,301 - -2.0 410,301 - +0.9 410,301 - -1.0 410,319 + +1.0 410,319 + -0.6 410,319 + +0.6 410,319 + -0.7 410,319 + -2.9 410,319 + -0.6 410,320 - -1.7 410,320 - +0.0 410,320 - -1.0 410,320 - +1.3 410,320 - +1.8 410,320 - -0.8 410,320 - +1.0 410,320 - +0.5 410,588 + GFF378 0.34 -2.6 410,588 + GFF378 0.34 -1.5 410,588 + GFF378 0.34 -3.2 410,589 - GFF378 0.34 -0.2 410,589 - GFF378 0.34 +0.3 411,175 - -0.3
Or see this region's nucleotide sequence