Strain Fitness in Variovorax sp. SCN45 around GFF3741

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3739 and GFF3740 are separated by 87 nucleotidesGFF3740 and GFF3741 overlap by 4 nucleotidesGFF3741 and GFF3742 overlap by 4 nucleotides GFF3739 - 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), at 235,060 to 235,968 GFF3739 GFF3740 - Transcriptional regulator, MerR family, at 236,056 to 236,538 GFF3740 GFF3741 - Uncharacterized MFS-type transporter, at 236,535 to 238,085 GFF3741 GFF3742 - Type IV pilus assembly ATPase component PilU, at 238,082 to 239,218 GFF3742 Position (kb) 236 237 238 239Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 235.841 kb on + strand, within GFF3739at 235.841 kb on + strand, within GFF3739at 235.842 kb on - strand, within GFF3739at 235.842 kb on - strand, within GFF3739at 235.842 kb on - strand, within GFF3739at 235.842 kb on - strand, within GFF3739at 235.944 kb on - strandat 235.981 kb on + strandat 235.982 kb on - strandat 235.982 kb on - strandat 236.029 kb on + strandat 236.137 kb on + strand, within GFF3740at 236.137 kb on + strand, within GFF3740at 236.137 kb on + strand, within GFF3740at 236.137 kb on + strand, within GFF3740at 236.137 kb on + strand, within GFF3740at 236.138 kb on - strand, within GFF3740at 236.138 kb on - strand, within GFF3740at 236.138 kb on - strand, within GFF3740at 236.138 kb on - strand, within GFF3740at 236.141 kb on - strand, within GFF3740at 236.141 kb on - strand, within GFF3740at 236.194 kb on + strand, within GFF3740at 236.195 kb on - strand, within GFF3740at 236.195 kb on - strand, within GFF3740at 236.195 kb on - strand, within GFF3740at 236.461 kb on + strand, within GFF3740at 236.461 kb on + strand, within GFF3740at 236.461 kb on + strand, within GFF3740at 236.461 kb on + strand, within GFF3740at 236.625 kb on + strandat 236.661 kb on + strandat 236.661 kb on + strandat 236.662 kb on - strandat 236.662 kb on - strandat 236.662 kb on - strandat 236.718 kb on + strand, within GFF3741at 236.718 kb on + strand, within GFF3741at 236.719 kb on - strand, within GFF3741at 236.779 kb on - strand, within GFF3741at 236.788 kb on - strand, within GFF3741at 236.886 kb on + strand, within GFF3741at 236.887 kb on - strand, within GFF3741at 237.159 kb on + strand, within GFF3741at 237.159 kb on + strand, within GFF3741at 237.159 kb on + strand, within GFF3741at 237.159 kb on + strand, within GFF3741at 237.159 kb on + strand, within GFF3741at 237.160 kb on - strand, within GFF3741at 237.160 kb on - strand, within GFF3741at 237.168 kb on + strand, within GFF3741at 237.169 kb on - strand, within GFF3741at 237.381 kb on + strand, within GFF3741at 237.382 kb on - strand, within GFF3741at 237.390 kb on + strand, within GFF3741at 237.390 kb on + strand, within GFF3741at 237.393 kb on + strand, within GFF3741at 237.393 kb on + strand, within GFF3741at 237.393 kb on + strand, within GFF3741at 237.393 kb on + strand, within GFF3741at 237.393 kb on + strand, within GFF3741at 237.394 kb on - strand, within GFF3741at 237.394 kb on - strand, within GFF3741at 237.394 kb on - strand, within GFF3741at 237.394 kb on - strand, within GFF3741at 237.394 kb on - strand, within GFF3741at 237.394 kb on - strand, within GFF3741at 237.394 kb on - strand, within GFF3741at 237.394 kb on - strand, within GFF3741at 237.396 kb on + strand, within GFF3741at 237.396 kb on + strand, within GFF3741at 237.396 kb on + strand, within GFF3741at 237.396 kb on + strand, within GFF3741at 237.396 kb on + strand, within GFF3741at 237.396 kb on + strand, within GFF3741at 237.397 kb on - strand, within GFF3741at 237.397 kb on - strand, within GFF3741at 237.397 kb on - strand, within GFF3741at 237.397 kb on - strand, within GFF3741at 237.417 kb on + strand, within GFF3741at 237.417 kb on + strand, within GFF3741at 237.417 kb on + strand, within GFF3741at 237.417 kb on + strand, within GFF3741at 237.418 kb on - strand, within GFF3741at 237.418 kb on - strand, within GFF3741at 237.474 kb on + strand, within GFF3741at 237.475 kb on - strand, within GFF3741at 237.475 kb on - strand, within GFF3741at 237.522 kb on + strand, within GFF3741at 237.522 kb on + strand, within GFF3741at 237.532 kb on - strand, within GFF3741at 237.784 kb on - strand, within GFF3741at 238.084 kb on - strandat 238.476 kb on - strand, within GFF3742

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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235,841 + GFF3739 0.86 -0.7
235,841 + GFF3739 0.86 -0.5
235,842 - GFF3739 0.86 -2.3
235,842 - GFF3739 0.86 +1.1
235,842 - GFF3739 0.86 -0.9
235,842 - GFF3739 0.86 +0.1
235,944 - -0.1
235,981 + -2.1
235,982 - -2.0
235,982 - +0.8
236,029 + +1.4
236,137 + GFF3740 0.17 -1.8
236,137 + GFF3740 0.17 -0.8
236,137 + GFF3740 0.17 +0.0
236,137 + GFF3740 0.17 -1.4
236,137 + GFF3740 0.17 +0.3
236,138 - GFF3740 0.17 +0.7
236,138 - GFF3740 0.17 -0.4
236,138 - GFF3740 0.17 -2.0
236,138 - GFF3740 0.17 -0.4
236,141 - GFF3740 0.18 -3.6
236,141 - GFF3740 0.18 -0.3
236,194 + GFF3740 0.29 -0.4
236,195 - GFF3740 0.29 -4.7
236,195 - GFF3740 0.29 +1.2
236,195 - GFF3740 0.29 -1.8
236,461 + GFF3740 0.84 -0.1
236,461 + GFF3740 0.84 +1.5
236,461 + GFF3740 0.84 +0.1
236,461 + GFF3740 0.84 +0.2
236,625 + +0.3
236,661 + +2.4
236,661 + +0.7
236,662 - +1.4
236,662 - +1.3
236,662 - +1.8
236,718 + GFF3741 0.12 -0.5
236,718 + GFF3741 0.12 -0.5
236,719 - GFF3741 0.12 +0.2
236,779 - GFF3741 0.16 +1.5
236,788 - GFF3741 0.16 +0.3
236,886 + GFF3741 0.23 +0.5
236,887 - GFF3741 0.23 -0.0
237,159 + GFF3741 0.40 -0.1
237,159 + GFF3741 0.40 -1.0
237,159 + GFF3741 0.40 -0.4
237,159 + GFF3741 0.40 +0.2
237,159 + GFF3741 0.40 +2.5
237,160 - GFF3741 0.40 +2.1
237,160 - GFF3741 0.40 +1.1
237,168 + GFF3741 0.41 -0.1
237,169 - GFF3741 0.41 -0.5
237,381 + GFF3741 0.55 +1.6
237,382 - GFF3741 0.55 -2.2
237,390 + GFF3741 0.55 -1.4
237,390 + GFF3741 0.55 +1.5
237,393 + GFF3741 0.55 -1.4
237,393 + GFF3741 0.55 +1.3
237,393 + GFF3741 0.55 -1.8
237,393 + GFF3741 0.55 +1.1
237,393 + GFF3741 0.55 -1.0
237,394 - GFF3741 0.55 -0.3
237,394 - GFF3741 0.55 -1.7
237,394 - GFF3741 0.55 -0.7
237,394 - GFF3741 0.55 +0.2
237,394 - GFF3741 0.55 +1.2
237,394 - GFF3741 0.55 -0.8
237,394 - GFF3741 0.55 -0.8
237,394 - GFF3741 0.55 +1.5
237,396 + GFF3741 0.56 +1.6
237,396 + GFF3741 0.56 -0.3
237,396 + GFF3741 0.56 -2.1
237,396 + GFF3741 0.56 -1.1
237,396 + GFF3741 0.56 +0.5
237,396 + GFF3741 0.56 +1.3
237,397 - GFF3741 0.56 +0.6
237,397 - GFF3741 0.56 +0.1
237,397 - GFF3741 0.56 +0.9
237,397 - GFF3741 0.56 +2.5
237,417 + GFF3741 0.57 +2.5
237,417 + GFF3741 0.57 +0.5
237,417 + GFF3741 0.57 -2.1
237,417 + GFF3741 0.57 -3.9
237,418 - GFF3741 0.57 +0.7
237,418 - GFF3741 0.57 +0.0
237,474 + GFF3741 0.61 -1.9
237,475 - GFF3741 0.61 +1.3
237,475 - GFF3741 0.61 -1.6
237,522 + GFF3741 0.64 +2.7
237,522 + GFF3741 0.64 -2.1
237,532 - GFF3741 0.64 -2.0
237,784 - GFF3741 0.81 +1.0
238,084 - +1.1
238,476 - GFF3742 0.35 +1.5

Or see this region's nucleotide sequence