Strain Fitness in Variovorax sp. SCN45 around GFF3720

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3719 and GFF3720 are separated by 217 nucleotidesGFF3720 and GFF3721 are separated by 66 nucleotides GFF3719 - Pyrimidine monooxygenase RutA (EC 1.14.99.46), at 216,176 to 217,288 GFF3719 GFF3720 - Alternative dihydrofolate reductase 3, at 217,506 to 217,958 GFF3720 GFF3721 - Hydrolase, alpha/beta fold family, at 218,025 to 219,002 GFF3721 Position (kb) 217 218Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 216.513 kb on + strand, within GFF3719at 216.513 kb on + strand, within GFF3719at 216.513 kb on + strand, within GFF3719at 216.513 kb on + strand, within GFF3719at 216.513 kb on + strand, within GFF3719at 216.513 kb on + strand, within GFF3719at 216.513 kb on + strand, within GFF3719at 216.513 kb on + strand, within GFF3719at 216.513 kb on + strand, within GFF3719at 216.513 kb on + strand, within GFF3719at 216.514 kb on - strand, within GFF3719at 216.514 kb on - strand, within GFF3719at 216.514 kb on - strand, within GFF3719at 216.576 kb on + strand, within GFF3719at 216.576 kb on + strand, within GFF3719at 216.576 kb on + strand, within GFF3719at 216.576 kb on + strand, within GFF3719at 216.576 kb on + strand, within GFF3719at 216.576 kb on + strand, within GFF3719at 216.576 kb on + strand, within GFF3719at 216.577 kb on - strand, within GFF3719at 216.577 kb on - strand, within GFF3719at 216.577 kb on - strand, within GFF3719at 216.577 kb on - strand, within GFF3719at 216.577 kb on - strand, within GFF3719at 216.681 kb on + strand, within GFF3719at 216.681 kb on + strand, within GFF3719at 216.690 kb on + strand, within GFF3719at 216.691 kb on - strand, within GFF3719at 216.850 kb on - strand, within GFF3719at 216.850 kb on - strand, within GFF3719at 216.850 kb on - strand, within GFF3719at 216.850 kb on - strand, within GFF3719at 216.861 kb on + strand, within GFF3719at 216.862 kb on - strand, within GFF3719at 216.862 kb on - strand, within GFF3719at 216.916 kb on - strand, within GFF3719at 217.221 kb on + strandat 217.222 kb on - strandat 217.222 kb on - strandat 217.222 kb on - strandat 217.222 kb on - strandat 217.222 kb on - strandat 217.346 kb on - strandat 217.355 kb on + strandat 217.368 kb on + strandat 217.369 kb on - strandat 217.369 kb on - strandat 217.372 kb on - strandat 217.575 kb on + strand, within GFF3720at 217.575 kb on + strand, within GFF3720at 217.575 kb on + strand, within GFF3720at 217.575 kb on + strand, within GFF3720at 217.576 kb on - strand, within GFF3720at 217.576 kb on - strand, within GFF3720at 217.648 kb on + strand, within GFF3720at 217.648 kb on + strand, within GFF3720at 217.648 kb on + strand, within GFF3720at 217.648 kb on + strand, within GFF3720at 217.649 kb on - strand, within GFF3720at 217.854 kb on + strand, within GFF3720at 217.854 kb on + strand, within GFF3720at 217.855 kb on - strand, within GFF3720at 217.855 kb on - strand, within GFF3720at 217.855 kb on - strand, within GFF3720at 217.855 kb on - strand, within GFF3720at 217.855 kb on - strand, within GFF3720at 218.031 kb on + strandat 218.088 kb on + strandat 218.088 kb on + strandat 218.088 kb on + strandat 218.089 kb on - strandat 218.247 kb on + strand, within GFF3721at 218.247 kb on + strand, within GFF3721at 218.247 kb on + strand, within GFF3721at 218.247 kb on + strand, within GFF3721at 218.248 kb on - strand, within GFF3721at 218.349 kb on + strand, within GFF3721at 218.350 kb on - strand, within GFF3721at 218.350 kb on - strand, within GFF3721at 218.530 kb on + strand, within GFF3721at 218.595 kb on + strand, within GFF3721at 218.700 kb on + strand, within GFF3721at 218.700 kb on + strand, within GFF3721at 218.700 kb on + strand, within GFF3721at 218.700 kb on + strand, within GFF3721at 218.700 kb on + strand, within GFF3721at 218.701 kb on - strand, within GFF3721at 218.701 kb on - strand, within GFF3721at 218.757 kb on + strand, within GFF3721at 218.757 kb on + strand, within GFF3721at 218.757 kb on + strand, within GFF3721at 218.758 kb on - strand, within GFF3721at 218.758 kb on - strand, within GFF3721at 218.758 kb on - strand, within GFF3721

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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216,513 + GFF3719 0.30 -2.1
216,513 + GFF3719 0.30 -0.8
216,513 + GFF3719 0.30 -1.0
216,513 + GFF3719 0.30 -0.0
216,513 + GFF3719 0.30 +0.2
216,513 + GFF3719 0.30 -1.5
216,513 + GFF3719 0.30 +0.5
216,513 + GFF3719 0.30 -1.1
216,513 + GFF3719 0.30 +0.6
216,513 + GFF3719 0.30 -1.9
216,514 - GFF3719 0.30 +0.0
216,514 - GFF3719 0.30 -3.7
216,514 - GFF3719 0.30 +0.1
216,576 + GFF3719 0.36 -0.5
216,576 + GFF3719 0.36 -1.1
216,576 + GFF3719 0.36 +0.9
216,576 + GFF3719 0.36 +1.6
216,576 + GFF3719 0.36 -0.9
216,576 + GFF3719 0.36 -3.3
216,576 + GFF3719 0.36 -0.3
216,577 - GFF3719 0.36 +0.4
216,577 - GFF3719 0.36 -3.5
216,577 - GFF3719 0.36 -0.4
216,577 - GFF3719 0.36 -1.2
216,577 - GFF3719 0.36 +0.2
216,681 + GFF3719 0.45 -0.3
216,681 + GFF3719 0.45 +0.6
216,690 + GFF3719 0.46 +0.9
216,691 - GFF3719 0.46 -1.1
216,850 - GFF3719 0.61 -0.5
216,850 - GFF3719 0.61 +1.3
216,850 - GFF3719 0.61 -1.4
216,850 - GFF3719 0.61 -1.3
216,861 + GFF3719 0.62 -3.1
216,862 - GFF3719 0.62 -0.9
216,862 - GFF3719 0.62 +0.7
216,916 - GFF3719 0.66 +0.5
217,221 + -0.8
217,222 - +0.9
217,222 - -2.7
217,222 - -0.4
217,222 - +0.1
217,222 - -0.5
217,346 - -3.1
217,355 + -1.6
217,368 + -2.5
217,369 - -0.0
217,369 - +0.6
217,372 - -0.4
217,575 + GFF3720 0.15 -1.1
217,575 + GFF3720 0.15 -1.1
217,575 + GFF3720 0.15 -1.8
217,575 + GFF3720 0.15 +0.4
217,576 - GFF3720 0.15 +0.5
217,576 - GFF3720 0.15 +2.5
217,648 + GFF3720 0.31 -0.3
217,648 + GFF3720 0.31 -0.8
217,648 + GFF3720 0.31 -0.0
217,648 + GFF3720 0.31 -2.5
217,649 - GFF3720 0.32 -1.5
217,854 + GFF3720 0.77 -1.0
217,854 + GFF3720 0.77 -0.1
217,855 - GFF3720 0.77 -2.5
217,855 - GFF3720 0.77 +0.5
217,855 - GFF3720 0.77 -2.3
217,855 - GFF3720 0.77 +0.6
217,855 - GFF3720 0.77 -2.0
218,031 + +2.3
218,088 + -2.0
218,088 + -2.3
218,088 + +0.1
218,089 - -2.6
218,247 + GFF3721 0.23 +0.5
218,247 + GFF3721 0.23 -1.1
218,247 + GFF3721 0.23 -2.0
218,247 + GFF3721 0.23 -0.8
218,248 - GFF3721 0.23 -1.8
218,349 + GFF3721 0.33 +1.2
218,350 - GFF3721 0.33 -1.0
218,350 - GFF3721 0.33 +4.5
218,530 + GFF3721 0.52 -2.6
218,595 + GFF3721 0.58 +0.3
218,700 + GFF3721 0.69 +1.7
218,700 + GFF3721 0.69 -1.5
218,700 + GFF3721 0.69 +1.1
218,700 + GFF3721 0.69 +0.9
218,700 + GFF3721 0.69 -2.2
218,701 - GFF3721 0.69 +0.3
218,701 - GFF3721 0.69 -0.7
218,757 + GFF3721 0.75 -1.4
218,757 + GFF3721 0.75 -0.4
218,757 + GFF3721 0.75 +0.2
218,758 - GFF3721 0.75 -0.3
218,758 - GFF3721 0.75 -2.2
218,758 - GFF3721 0.75 -1.9

Or see this region's nucleotide sequence