Strain Fitness in Variovorax sp. SCN45 around GFF3613

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3612 and GFF3613 are separated by 7 nucleotidesGFF3613 and GFF3614 are separated by 8 nucleotidesGFF3614 and GFF3615 are separated by 3 nucleotides GFF3612 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 126,270 to 127,436 GFF3612 GFF3613 - Protein of unknown function DUF55, at 127,444 to 127,917 GFF3613 GFF3614 - UPF0056 inner membrane protein YchE, at 127,926 to 128,579 GFF3614 GFF3615 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 128,583 to 129,329 GFF3615 Position (kb) 127 128Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 126.648 kb on + strand, within GFF3612at 126.648 kb on + strand, within GFF3612at 126.648 kb on + strand, within GFF3612at 126.648 kb on + strand, within GFF3612at 126.648 kb on + strand, within GFF3612at 126.648 kb on + strand, within GFF3612at 126.648 kb on + strand, within GFF3612at 126.649 kb on - strand, within GFF3612at 126.649 kb on - strand, within GFF3612at 126.649 kb on - strand, within GFF3612at 126.649 kb on - strand, within GFF3612at 126.649 kb on - strand, within GFF3612at 126.649 kb on - strand, within GFF3612at 126.649 kb on - strand, within GFF3612at 126.678 kb on + strand, within GFF3612at 126.679 kb on - strand, within GFF3612at 126.679 kb on - strand, within GFF3612at 126.702 kb on + strand, within GFF3612at 126.702 kb on + strand, within GFF3612at 126.720 kb on + strand, within GFF3612at 126.720 kb on + strand, within GFF3612at 126.720 kb on + strand, within GFF3612at 126.720 kb on + strand, within GFF3612at 126.720 kb on + strand, within GFF3612at 126.720 kb on + strand, within GFF3612at 126.721 kb on - strand, within GFF3612at 126.721 kb on - strand, within GFF3612at 126.721 kb on - strand, within GFF3612at 126.721 kb on - strand, within GFF3612at 126.721 kb on - strand, within GFF3612at 126.723 kb on + strand, within GFF3612at 126.724 kb on - strand, within GFF3612at 126.724 kb on - strand, within GFF3612at 126.724 kb on - strand, within GFF3612at 126.724 kb on - strand, within GFF3612at 126.792 kb on + strand, within GFF3612at 126.793 kb on - strand, within GFF3612at 127.045 kb on - strand, within GFF3612at 127.045 kb on - strand, within GFF3612at 127.092 kb on + strand, within GFF3612at 127.092 kb on + strand, within GFF3612at 127.092 kb on + strand, within GFF3612at 127.092 kb on + strand, within GFF3612at 127.093 kb on - strand, within GFF3612at 127.093 kb on - strand, within GFF3612at 127.093 kb on - strand, within GFF3612at 127.093 kb on - strand, within GFF3612at 127.093 kb on - strand, within GFF3612at 127.093 kb on - strand, within GFF3612at 127.093 kb on - strand, within GFF3612at 127.120 kb on - strand, within GFF3612at 127.120 kb on - strand, within GFF3612at 127.164 kb on + strand, within GFF3612at 127.164 kb on + strand, within GFF3612at 127.164 kb on + strand, within GFF3612at 127.164 kb on + strand, within GFF3612at 127.164 kb on + strand, within GFF3612at 127.164 kb on + strand, within GFF3612at 127.164 kb on + strand, within GFF3612at 127.165 kb on - strand, within GFF3612at 127.165 kb on - strand, within GFF3612at 127.165 kb on - strand, within GFF3612at 127.207 kb on - strand, within GFF3612at 127.212 kb on + strand, within GFF3612at 127.213 kb on - strand, within GFF3612at 127.341 kb on + strandat 127.341 kb on + strandat 127.341 kb on + strandat 127.341 kb on + strandat 127.342 kb on - strandat 127.342 kb on - strandat 127.342 kb on - strandat 127.342 kb on - strandat 127.422 kb on + strandat 127.422 kb on + strandat 127.422 kb on + strandat 127.423 kb on - strandat 127.423 kb on - strandat 127.423 kb on - strandat 127.423 kb on - strandat 127.423 kb on - strandat 127.558 kb on + strand, within GFF3613at 127.558 kb on + strand, within GFF3613at 127.558 kb on + strand, within GFF3613at 127.558 kb on + strand, within GFF3613at 127.558 kb on + strand, within GFF3613at 127.559 kb on - strand, within GFF3613at 127.559 kb on - strand, within GFF3613at 127.615 kb on + strand, within GFF3613at 127.616 kb on - strand, within GFF3613at 127.616 kb on - strand, within GFF3613at 127.616 kb on - strand, within GFF3613at 127.616 kb on - strand, within GFF3613at 127.616 kb on - strand, within GFF3613at 127.616 kb on - strand, within GFF3613at 127.711 kb on + strand, within GFF3613at 127.712 kb on - strand, within GFF3613at 127.712 kb on - strand, within GFF3613at 127.714 kb on + strand, within GFF3613at 127.714 kb on + strand, within GFF3613at 127.714 kb on + strand, within GFF3613at 127.715 kb on - strand, within GFF3613at 127.715 kb on - strand, within GFF3613at 127.715 kb on - strand, within GFF3613at 127.945 kb on - strandat 128.114 kb on - strand, within GFF3614at 128.161 kb on + strand, within GFF3614at 128.479 kb on + strand, within GFF3614at 128.479 kb on + strand, within GFF3614at 128.479 kb on + strand, within GFF3614at 128.480 kb on - strand, within GFF3614at 128.480 kb on - strand, within GFF3614at 128.480 kb on - strand, within GFF3614at 128.492 kb on - strand, within GFF3614at 128.492 kb on - strand, within GFF3614at 128.623 kb on + strandat 128.623 kb on + strandat 128.623 kb on + strandat 128.623 kb on + strandat 128.624 kb on - strandat 128.624 kb on - strandat 128.624 kb on - strandat 128.624 kb on - strandat 128.624 kb on - strandat 128.624 kb on - strandat 128.861 kb on - strand, within GFF3615at 128.869 kb on + strand, within GFF3615at 128.869 kb on + strand, within GFF3615at 128.869 kb on + strand, within GFF3615at 128.869 kb on + strand, within GFF3615at 128.869 kb on + strand, within GFF3615at 128.869 kb on + strand, within GFF3615at 128.869 kb on + strand, within GFF3615at 128.870 kb on - strand, within GFF3615at 128.870 kb on - strand, within GFF3615at 128.870 kb on - strand, within GFF3615at 128.870 kb on - strand, within GFF3615at 128.870 kb on - strand, within GFF3615

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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126,648 + GFF3612 0.32 -0.3
126,648 + GFF3612 0.32 -1.6
126,648 + GFF3612 0.32 -2.2
126,648 + GFF3612 0.32 -0.9
126,648 + GFF3612 0.32 +2.0
126,648 + GFF3612 0.32 -3.1
126,648 + GFF3612 0.32 +0.2
126,649 - GFF3612 0.32 -0.1
126,649 - GFF3612 0.32 +0.4
126,649 - GFF3612 0.32 -1.7
126,649 - GFF3612 0.32 -2.3
126,649 - GFF3612 0.32 -2.0
126,649 - GFF3612 0.32 +0.5
126,649 - GFF3612 0.32 -1.6
126,678 + GFF3612 0.35 -0.8
126,679 - GFF3612 0.35 -1.1
126,679 - GFF3612 0.35 +2.1
126,702 + GFF3612 0.37 -0.0
126,702 + GFF3612 0.37 -0.8
126,720 + GFF3612 0.39 +0.7
126,720 + GFF3612 0.39 -3.1
126,720 + GFF3612 0.39 -0.6
126,720 + GFF3612 0.39 -0.4
126,720 + GFF3612 0.39 -2.7
126,720 + GFF3612 0.39 -0.9
126,721 - GFF3612 0.39 -0.5
126,721 - GFF3612 0.39 -3.7
126,721 - GFF3612 0.39 +0.3
126,721 - GFF3612 0.39 +0.2
126,721 - GFF3612 0.39 -1.7
126,723 + GFF3612 0.39 -1.0
126,724 - GFF3612 0.39 +0.3
126,724 - GFF3612 0.39 +1.5
126,724 - GFF3612 0.39 +1.1
126,724 - GFF3612 0.39 -1.5
126,792 + GFF3612 0.45 +1.1
126,793 - GFF3612 0.45 +1.4
127,045 - GFF3612 0.66 -0.6
127,045 - GFF3612 0.66 +1.5
127,092 + GFF3612 0.70 +0.8
127,092 + GFF3612 0.70 +0.2
127,092 + GFF3612 0.70 -3.4
127,092 + GFF3612 0.70 +1.3
127,093 - GFF3612 0.71 +0.9
127,093 - GFF3612 0.71 -0.0
127,093 - GFF3612 0.71 -1.1
127,093 - GFF3612 0.71 -0.7
127,093 - GFF3612 0.71 -0.2
127,093 - GFF3612 0.71 -2.0
127,093 - GFF3612 0.71 -0.7
127,120 - GFF3612 0.73 -2.0
127,120 - GFF3612 0.73 +1.6
127,164 + GFF3612 0.77 +0.3
127,164 + GFF3612 0.77 +1.3
127,164 + GFF3612 0.77 -2.1
127,164 + GFF3612 0.77 -0.1
127,164 + GFF3612 0.77 -1.2
127,164 + GFF3612 0.77 -1.2
127,164 + GFF3612 0.77 -1.4
127,165 - GFF3612 0.77 -0.8
127,165 - GFF3612 0.77 -0.1
127,165 - GFF3612 0.77 -0.2
127,207 - GFF3612 0.80 -0.3
127,212 + GFF3612 0.81 +0.5
127,213 - GFF3612 0.81 -0.1
127,341 + -1.2
127,341 + -1.7
127,341 + +0.3
127,341 + -2.7
127,342 - -2.6
127,342 - -1.2
127,342 - +0.2
127,342 - -0.6
127,422 + -2.4
127,422 + +0.9
127,422 + -2.9
127,423 - -1.9
127,423 - -0.1
127,423 - -2.4
127,423 - -1.5
127,423 - -0.1
127,558 + GFF3613 0.24 +0.2
127,558 + GFF3613 0.24 +2.3
127,558 + GFF3613 0.24 -1.1
127,558 + GFF3613 0.24 -2.3
127,558 + GFF3613 0.24 -2.6
127,559 - GFF3613 0.24 -2.1
127,559 - GFF3613 0.24 -0.8
127,615 + GFF3613 0.36 +0.2
127,616 - GFF3613 0.36 -1.3
127,616 - GFF3613 0.36 -0.7
127,616 - GFF3613 0.36 -3.7
127,616 - GFF3613 0.36 +1.5
127,616 - GFF3613 0.36 -2.7
127,616 - GFF3613 0.36 -1.2
127,711 + GFF3613 0.56 -0.5
127,712 - GFF3613 0.57 -1.3
127,712 - GFF3613 0.57 -0.9
127,714 + GFF3613 0.57 -0.3
127,714 + GFF3613 0.57 +0.5
127,714 + GFF3613 0.57 +0.2
127,715 - GFF3613 0.57 -0.8
127,715 - GFF3613 0.57 +0.3
127,715 - GFF3613 0.57 -2.0
127,945 - -1.1
128,114 - GFF3614 0.29 +0.9
128,161 + GFF3614 0.36 -1.4
128,479 + GFF3614 0.85 -0.8
128,479 + GFF3614 0.85 +1.7
128,479 + GFF3614 0.85 -1.7
128,480 - GFF3614 0.85 -0.1
128,480 - GFF3614 0.85 +1.1
128,480 - GFF3614 0.85 +0.0
128,492 - GFF3614 0.87 -0.5
128,492 - GFF3614 0.87 -1.8
128,623 + +1.3
128,623 + -2.7
128,623 + +2.5
128,623 + +1.8
128,624 - -1.1
128,624 - -0.8
128,624 - -2.2
128,624 - +0.1
128,624 - -0.7
128,624 - +0.9
128,861 - GFF3615 0.37 +0.1
128,869 + GFF3615 0.38 -1.4
128,869 + GFF3615 0.38 -2.1
128,869 + GFF3615 0.38 -1.9
128,869 + GFF3615 0.38 -1.9
128,869 + GFF3615 0.38 +1.5
128,869 + GFF3615 0.38 +1.0
128,869 + GFF3615 0.38 -0.7
128,870 - GFF3615 0.38 +0.1
128,870 - GFF3615 0.38 -1.4
128,870 - GFF3615 0.38 -2.5
128,870 - GFF3615 0.38 -1.1
128,870 - GFF3615 0.38 +1.1

Or see this region's nucleotide sequence