Strain Fitness in Variovorax sp. SCN45 around GFF3608

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3606 and GFF3607 are separated by 14 nucleotidesGFF3607 and GFF3608 are separated by 7 nucleotidesGFF3608 and GFF3609 overlap by 4 nucleotides GFF3606 - Similarities with probable transcriptional regulator LumQ, at 119,706 to 120,536 GFF3606 GFF3607 - ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 120,551 to 121,426 GFF3607 GFF3608 - ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 121,434 to 122,510 GFF3608 GFF3609 - ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 122,507 to 123,328 GFF3609 Position (kb) 121 122 123Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 120.457 kb on - strandat 120.599 kb on + strandat 120.600 kb on - strandat 120.600 kb on - strandat 120.600 kb on - strandat 120.600 kb on - strandat 120.858 kb on - strand, within GFF3607at 120.926 kb on + strand, within GFF3607at 120.926 kb on + strand, within GFF3607at 120.927 kb on - strand, within GFF3607at 121.089 kb on - strand, within GFF3607at 121.089 kb on - strand, within GFF3607at 121.091 kb on + strand, within GFF3607at 121.091 kb on + strand, within GFF3607at 121.091 kb on + strand, within GFF3607at 121.091 kb on + strand, within GFF3607at 121.091 kb on + strand, within GFF3607at 121.091 kb on + strand, within GFF3607at 121.091 kb on + strand, within GFF3607at 121.091 kb on + strand, within GFF3607at 121.091 kb on + strand, within GFF3607at 121.091 kb on + strand, within GFF3607at 121.091 kb on + strand, within GFF3607at 121.092 kb on - strand, within GFF3607at 121.092 kb on - strand, within GFF3607at 121.092 kb on - strand, within GFF3607at 121.092 kb on - strand, within GFF3607at 121.320 kb on - strand, within GFF3607at 121.320 kb on - strand, within GFF3607at 121.353 kb on - strandat 121.353 kb on - strandat 121.424 kb on + strandat 121.424 kb on + strandat 121.424 kb on + strandat 121.424 kb on + strandat 121.424 kb on + strandat 121.424 kb on + strandat 121.424 kb on + strandat 121.424 kb on + strandat 121.425 kb on - strandat 121.425 kb on - strandat 121.425 kb on - strandat 121.433 kb on + strandat 121.458 kb on + strandat 121.458 kb on + strandat 121.459 kb on - strandat 121.459 kb on - strandat 121.459 kb on - strandat 121.558 kb on - strand, within GFF3608at 121.591 kb on - strand, within GFF3608at 121.591 kb on - strand, within GFF3608at 121.680 kb on + strand, within GFF3608at 121.803 kb on + strand, within GFF3608at 121.803 kb on + strand, within GFF3608at 121.803 kb on + strand, within GFF3608at 121.804 kb on - strand, within GFF3608at 121.804 kb on - strand, within GFF3608at 121.804 kb on - strand, within GFF3608at 121.947 kb on + strand, within GFF3608at 121.947 kb on + strand, within GFF3608at 121.947 kb on + strand, within GFF3608at 121.947 kb on + strand, within GFF3608at 121.948 kb on - strand, within GFF3608at 121.948 kb on - strand, within GFF3608at 122.355 kb on + strand, within GFF3608at 122.355 kb on + strand, within GFF3608at 122.356 kb on - strand, within GFF3608at 122.356 kb on - strand, within GFF3608at 122.356 kb on - strand, within GFF3608at 122.356 kb on - strand, within GFF3608at 122.404 kb on - strandat 122.675 kb on + strand, within GFF3609at 122.676 kb on - strand, within GFF3609at 122.993 kb on + strand, within GFF3609at 122.994 kb on - strand, within GFF3609at 123.222 kb on + strand, within GFF3609at 123.223 kb on - strand, within GFF3609at 123.223 kb on - strand, within GFF3609at 123.223 kb on - strand, within GFF3609

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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120,457 - -1.1
120,599 + -1.2
120,600 - +0.9
120,600 - +0.9
120,600 - -0.1
120,600 - -1.2
120,858 - GFF3607 0.35 +1.0
120,926 + GFF3607 0.43 +0.7
120,926 + GFF3607 0.43 -0.8
120,927 - GFF3607 0.43 -0.3
121,089 - GFF3607 0.61 +0.7
121,089 - GFF3607 0.61 -1.9
121,091 + GFF3607 0.62 -2.4
121,091 + GFF3607 0.62 +0.8
121,091 + GFF3607 0.62 -1.9
121,091 + GFF3607 0.62 -0.2
121,091 + GFF3607 0.62 +0.0
121,091 + GFF3607 0.62 +1.0
121,091 + GFF3607 0.62 -0.3
121,091 + GFF3607 0.62 -3.1
121,091 + GFF3607 0.62 -1.8
121,091 + GFF3607 0.62 +0.4
121,091 + GFF3607 0.62 +0.9
121,092 - GFF3607 0.62 +0.3
121,092 - GFF3607 0.62 -1.7
121,092 - GFF3607 0.62 -2.1
121,092 - GFF3607 0.62 +2.0
121,320 - GFF3607 0.88 -3.3
121,320 - GFF3607 0.88 -4.3
121,353 - -1.7
121,353 - -2.5
121,424 + -3.4
121,424 + -1.6
121,424 + +0.0
121,424 + -1.2
121,424 + +2.2
121,424 + +1.0
121,424 + -2.1
121,424 + +1.7
121,425 - +1.1
121,425 - -1.7
121,425 - +0.2
121,433 + +0.8
121,458 + +0.5
121,458 + +0.1
121,459 - +0.2
121,459 - +0.9
121,459 - -1.1
121,558 - GFF3608 0.12 +0.6
121,591 - GFF3608 0.15 -1.7
121,591 - GFF3608 0.15 +1.4
121,680 + GFF3608 0.23 -0.4
121,803 + GFF3608 0.34 +0.8
121,803 + GFF3608 0.34 +0.2
121,803 + GFF3608 0.34 -2.0
121,804 - GFF3608 0.34 -0.3
121,804 - GFF3608 0.34 -2.7
121,804 - GFF3608 0.34 -2.7
121,947 + GFF3608 0.48 -0.3
121,947 + GFF3608 0.48 -0.1
121,947 + GFF3608 0.48 -1.8
121,947 + GFF3608 0.48 -0.8
121,948 - GFF3608 0.48 -2.5
121,948 - GFF3608 0.48 -1.7
122,355 + GFF3608 0.86 +1.4
122,355 + GFF3608 0.86 -1.7
122,356 - GFF3608 0.86 -1.5
122,356 - GFF3608 0.86 +0.6
122,356 - GFF3608 0.86 -0.7
122,356 - GFF3608 0.86 -0.7
122,404 - -0.8
122,675 + GFF3609 0.20 -1.6
122,676 - GFF3609 0.21 -0.2
122,993 + GFF3609 0.59 -0.1
122,994 - GFF3609 0.59 -0.3
123,222 + GFF3609 0.87 -1.9
123,223 - GFF3609 0.87 -0.8
123,223 - GFF3609 0.87 -0.4
123,223 - GFF3609 0.87 +0.9

Or see this region's nucleotide sequence