Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3574 and GFF3575 overlap by 4 nucleotides GFF3575 and GFF3576 overlap by 4 nucleotides GFF3576 and GFF3577 overlap by 4 nucleotides
GFF3574 - hypothetical protein, at 86,391 to 87,233
GFF3574
GFF3575 - no description, at 87,230 to 87,916
GFF3575
GFF3576 - no description, at 87,913 to 88,554
GFF3576
GFF3577 - Transcriptional regulator, LysR family, at 88,551 to 89,441
GFF3577
Position (kb) 87
88
89 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 86.928 kb on + strand, within GFF3574 at 86.928 kb on + strand, within GFF3574 at 86.929 kb on - strand, within GFF3574 at 87.422 kb on + strand, within GFF3575 at 87.422 kb on + strand, within GFF3575 at 87.722 kb on + strand, within GFF3575 at 87.722 kb on + strand, within GFF3575 at 87.722 kb on + strand, within GFF3575 at 87.723 kb on - strand, within GFF3575 at 87.723 kb on - strand, within GFF3575 at 87.723 kb on - strand, within GFF3575 at 88.074 kb on + strand, within GFF3576 at 88.074 kb on + strand, within GFF3576 at 88.075 kb on - strand, within GFF3576 at 88.240 kb on + strand, within GFF3576 at 88.241 kb on - strand, within GFF3576 at 88.633 kb on + strand at 88.633 kb on + strand at 88.633 kb on + strand at 88.634 kb on - strand at 88.720 kb on + strand, within GFF3577 at 88.720 kb on + strand, within GFF3577 at 88.721 kb on - strand, within GFF3577 at 88.721 kb on - strand, within GFF3577 at 88.930 kb on + strand, within GFF3577 at 88.931 kb on - strand, within GFF3577 at 89.089 kb on + strand, within GFF3577 at 89.089 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.248 kb on + strand, within GFF3577 at 89.248 kb on + strand, within GFF3577
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 86,928 + GFF3574 0.64 -0.7 86,928 + GFF3574 0.64 -1.0 86,929 - GFF3574 0.64 -0.1 87,422 + GFF3575 0.28 -0.4 87,422 + GFF3575 0.28 -0.4 87,722 + GFF3575 0.72 -0.1 87,722 + GFF3575 0.72 -1.1 87,722 + GFF3575 0.72 -0.2 87,723 - GFF3575 0.72 -0.8 87,723 - GFF3575 0.72 -1.4 87,723 - GFF3575 0.72 +0.5 88,074 + GFF3576 0.25 -0.1 88,074 + GFF3576 0.25 +0.1 88,075 - GFF3576 0.25 +0.5 88,240 + GFF3576 0.51 -2.1 88,241 - GFF3576 0.51 +4.2 88,633 + -2.1 88,633 + +1.3 88,633 + -2.0 88,634 - -1.2 88,720 + GFF3577 0.19 -3.5 88,720 + GFF3577 0.19 +3.5 88,721 - GFF3577 0.19 -2.5 88,721 - GFF3577 0.19 -1.4 88,930 + GFF3577 0.43 +2.5 88,931 - GFF3577 0.43 -2.4 89,089 + GFF3577 0.60 -1.2 89,089 + GFF3577 0.60 -2.4 89,125 + GFF3577 0.64 -1.4 89,125 + GFF3577 0.64 +3.7 89,125 + GFF3577 0.64 -1.7 89,125 + GFF3577 0.64 -1.4 89,125 + GFF3577 0.64 -1.0 89,125 + GFF3577 0.64 -3.1 89,125 + GFF3577 0.64 +1.0 89,125 + GFF3577 0.64 +0.9 89,125 + GFF3577 0.64 -1.3 89,125 + GFF3577 0.64 +0.4 89,125 + GFF3577 0.64 -2.8 89,125 + GFF3577 0.64 -2.5 89,125 + GFF3577 0.64 +0.2 89,125 + GFF3577 0.64 -0.1 89,126 - GFF3577 0.65 -2.4 89,126 - GFF3577 0.65 -2.6 89,126 - GFF3577 0.65 -3.3 89,126 - GFF3577 0.65 -1.2 89,126 - GFF3577 0.65 +1.5 89,126 - GFF3577 0.65 -2.1 89,126 - GFF3577 0.65 -1.8 89,126 - GFF3577 0.65 +0.8 89,126 - GFF3577 0.65 +1.7 89,126 - GFF3577 0.65 -1.2 89,126 - GFF3577 0.65 -2.9 89,126 - GFF3577 0.65 -0.2 89,126 - GFF3577 0.65 -1.7 89,126 - GFF3577 0.65 -1.2 89,248 + GFF3577 0.78 -1.7 89,248 + GFF3577 0.78 +0.2
Or see this region's nucleotide sequence