Strain Fitness in Variovorax sp. SCN45 around GFF3560

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3558 and GFF3559 are separated by 3 nucleotidesGFF3559 and GFF3560 overlap by 11 nucleotidesGFF3560 and GFF3561 are separated by 36 nucleotides GFF3558 - hypothetical protein, at 69,121 to 70,251 GFF3558 GFF3559 - no description, at 70,255 to 71,031 GFF3559 GFF3560 - hypothetical protein, at 71,021 to 72,040 GFF3560 GFF3561 - Glycosyltransferases involved in cell wall biogenesis, at 72,077 to 73,105 GFF3561 Position (kb) 71 72 73Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 70.070 kb on + strand, within GFF3558at 70.071 kb on - strand, within GFF3558at 70.232 kb on + strandat 70.233 kb on - strandat 70.233 kb on - strandat 70.233 kb on - strandat 70.233 kb on - strandat 70.577 kb on + strand, within GFF3559at 70.577 kb on + strand, within GFF3559at 70.577 kb on + strand, within GFF3559at 70.577 kb on + strand, within GFF3559at 70.578 kb on - strand, within GFF3559at 70.578 kb on - strand, within GFF3559at 70.578 kb on - strand, within GFF3559at 70.578 kb on - strand, within GFF3559at 70.578 kb on - strand, within GFF3559at 70.578 kb on - strand, within GFF3559at 70.578 kb on - strand, within GFF3559at 70.862 kb on + strand, within GFF3559at 71.172 kb on + strand, within GFF3560at 71.172 kb on + strand, within GFF3560at 71.172 kb on + strand, within GFF3560at 71.172 kb on + strand, within GFF3560at 71.172 kb on + strand, within GFF3560at 71.172 kb on + strand, within GFF3560at 71.173 kb on - strand, within GFF3560at 71.173 kb on - strand, within GFF3560at 71.173 kb on - strand, within GFF3560at 71.173 kb on - strand, within GFF3560at 71.173 kb on - strand, within GFF3560at 71.173 kb on - strand, within GFF3560at 71.173 kb on - strand, within GFF3560at 71.173 kb on - strand, within GFF3560at 71.269 kb on - strand, within GFF3560at 71.604 kb on + strand, within GFF3560at 71.604 kb on + strand, within GFF3560at 71.604 kb on + strand, within GFF3560at 71.604 kb on + strand, within GFF3560at 71.605 kb on - strand, within GFF3560at 71.605 kb on - strand, within GFF3560at 71.605 kb on - strand, within GFF3560at 71.788 kb on - strand, within GFF3560at 72.090 kb on + strandat 72.090 kb on + strandat 72.090 kb on + strandat 72.091 kb on - strandat 72.091 kb on - strandat 72.342 kb on + strand, within GFF3561at 72.342 kb on + strand, within GFF3561at 72.342 kb on + strand, within GFF3561at 72.342 kb on + strand, within GFF3561at 72.343 kb on - strand, within GFF3561at 72.343 kb on - strand, within GFF3561at 72.343 kb on - strand, within GFF3561at 72.343 kb on - strand, within GFF3561at 72.343 kb on - strand, within GFF3561at 72.343 kb on - strand, within GFF3561at 72.372 kb on + strand, within GFF3561at 72.372 kb on + strand, within GFF3561at 72.372 kb on + strand, within GFF3561at 72.372 kb on + strand, within GFF3561at 72.373 kb on - strand, within GFF3561at 72.373 kb on - strand, within GFF3561at 72.373 kb on - strand, within GFF3561at 72.373 kb on - strand, within GFF3561at 72.373 kb on - strand, within GFF3561at 72.373 kb on - strand, within GFF3561at 72.373 kb on - strand, within GFF3561at 72.373 kb on - strand, within GFF3561at 72.373 kb on - strand, within GFF3561at 72.460 kb on - strand, within GFF3561at 72.520 kb on - strand, within GFF3561at 72.520 kb on - strand, within GFF3561at 72.540 kb on + strand, within GFF3561at 72.540 kb on + strand, within GFF3561at 72.540 kb on + strand, within GFF3561at 72.540 kb on + strand, within GFF3561at 72.541 kb on - strand, within GFF3561at 72.541 kb on - strand, within GFF3561at 72.541 kb on - strand, within GFF3561at 72.541 kb on - strand, within GFF3561at 72.588 kb on + strand, within GFF3561at 72.630 kb on + strand, within GFF3561at 72.630 kb on + strand, within GFF3561at 72.630 kb on + strand, within GFF3561at 72.630 kb on + strand, within GFF3561at 72.630 kb on + strand, within GFF3561at 72.630 kb on + strand, within GFF3561at 72.630 kb on + strand, within GFF3561at 72.630 kb on + strand, within GFF3561at 72.630 kb on + strand, within GFF3561at 72.630 kb on + strand, within GFF3561at 72.631 kb on - strand, within GFF3561at 72.631 kb on - strand, within GFF3561at 72.631 kb on - strand, within GFF3561at 72.631 kb on - strand, within GFF3561at 72.631 kb on - strand, within GFF3561at 72.631 kb on - strand, within GFF3561at 72.631 kb on - strand, within GFF3561at 72.631 kb on - strand, within GFF3561at 72.843 kb on + strand, within GFF3561at 72.843 kb on + strand, within GFF3561at 72.843 kb on + strand, within GFF3561at 72.844 kb on - strand, within GFF3561at 72.844 kb on - strand, within GFF3561at 72.844 kb on - strand, within GFF3561at 72.846 kb on + strand, within GFF3561

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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70,070 + GFF3558 0.84 +1.4
70,071 - GFF3558 0.84 -2.8
70,232 + -0.8
70,233 - -2.5
70,233 - -2.4
70,233 - -1.0
70,233 - -2.9
70,577 + GFF3559 0.41 +1.1
70,577 + GFF3559 0.41 -0.7
70,577 + GFF3559 0.41 -0.1
70,577 + GFF3559 0.41 +0.6
70,578 - GFF3559 0.42 -0.6
70,578 - GFF3559 0.42 +0.6
70,578 - GFF3559 0.42 -4.3
70,578 - GFF3559 0.42 +1.1
70,578 - GFF3559 0.42 +0.1
70,578 - GFF3559 0.42 +1.7
70,578 - GFF3559 0.42 -1.9
70,862 + GFF3559 0.78 +2.9
71,172 + GFF3560 0.15 -1.1
71,172 + GFF3560 0.15 -1.2
71,172 + GFF3560 0.15 -0.3
71,172 + GFF3560 0.15 -3.7
71,172 + GFF3560 0.15 +1.1
71,172 + GFF3560 0.15 -2.4
71,173 - GFF3560 0.15 -2.8
71,173 - GFF3560 0.15 -0.3
71,173 - GFF3560 0.15 -0.1
71,173 - GFF3560 0.15 +1.3
71,173 - GFF3560 0.15 -1.4
71,173 - GFF3560 0.15 -0.5
71,173 - GFF3560 0.15 +0.6
71,173 - GFF3560 0.15 +1.3
71,269 - GFF3560 0.24 +0.0
71,604 + GFF3560 0.57 +1.0
71,604 + GFF3560 0.57 +0.7
71,604 + GFF3560 0.57 +1.3
71,604 + GFF3560 0.57 +0.9
71,605 - GFF3560 0.57 +1.0
71,605 - GFF3560 0.57 +1.3
71,605 - GFF3560 0.57 +0.7
71,788 - GFF3560 0.75 -1.0
72,090 + -0.3
72,090 + +0.6
72,090 + +0.3
72,091 - -0.6
72,091 - +0.1
72,342 + GFF3561 0.26 +1.2
72,342 + GFF3561 0.26 -1.1
72,342 + GFF3561 0.26 -1.4
72,342 + GFF3561 0.26 +0.5
72,343 - GFF3561 0.26 +1.7
72,343 - GFF3561 0.26 -2.0
72,343 - GFF3561 0.26 -3.1
72,343 - GFF3561 0.26 -1.2
72,343 - GFF3561 0.26 -0.7
72,343 - GFF3561 0.26 +1.2
72,372 + GFF3561 0.29 -0.2
72,372 + GFF3561 0.29 -0.3
72,372 + GFF3561 0.29 -0.0
72,372 + GFF3561 0.29 -2.5
72,373 - GFF3561 0.29 -0.3
72,373 - GFF3561 0.29 -0.3
72,373 - GFF3561 0.29 +1.3
72,373 - GFF3561 0.29 -0.6
72,373 - GFF3561 0.29 +0.5
72,373 - GFF3561 0.29 +2.0
72,373 - GFF3561 0.29 -1.0
72,373 - GFF3561 0.29 -1.8
72,373 - GFF3561 0.29 +2.3
72,460 - GFF3561 0.37 +1.1
72,520 - GFF3561 0.43 +0.6
72,520 - GFF3561 0.43 +1.4
72,540 + GFF3561 0.45 +0.9
72,540 + GFF3561 0.45 -4.4
72,540 + GFF3561 0.45 +0.5
72,540 + GFF3561 0.45 -1.2
72,541 - GFF3561 0.45 -2.1
72,541 - GFF3561 0.45 +0.5
72,541 - GFF3561 0.45 -0.7
72,541 - GFF3561 0.45 +0.8
72,588 + GFF3561 0.50 +0.5
72,630 + GFF3561 0.54 +1.5
72,630 + GFF3561 0.54 -3.6
72,630 + GFF3561 0.54 -3.3
72,630 + GFF3561 0.54 -1.0
72,630 + GFF3561 0.54 -2.0
72,630 + GFF3561 0.54 +1.6
72,630 + GFF3561 0.54 +2.5
72,630 + GFF3561 0.54 +0.4
72,630 + GFF3561 0.54 +1.4
72,630 + GFF3561 0.54 -1.2
72,631 - GFF3561 0.54 +0.3
72,631 - GFF3561 0.54 +0.2
72,631 - GFF3561 0.54 -2.4
72,631 - GFF3561 0.54 +1.1
72,631 - GFF3561 0.54 +2.0
72,631 - GFF3561 0.54 -2.4
72,631 - GFF3561 0.54 +0.3
72,631 - GFF3561 0.54 +0.2
72,843 + GFF3561 0.74 +0.4
72,843 + GFF3561 0.74 -2.1
72,843 + GFF3561 0.74 +1.0
72,844 - GFF3561 0.75 +0.3
72,844 - GFF3561 0.75 +0.0
72,844 - GFF3561 0.75 +0.4
72,846 + GFF3561 0.75 -2.0

Or see this region's nucleotide sequence