Strain Fitness in Variovorax sp. SCN45 around GFF3476

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3475 and GFF3476 are separated by 85 nucleotidesGFF3476 and GFF3477 are separated by 95 nucleotides GFF3475 - Gate supefamily SpmA/SpmB domains protein, at 295,848 to 297,077 GFF3475 GFF3476 - Cardiolipin synthase (EC 2.7.8.-) phosphatidylethanolamine-utilizing, bacterial type ClsC, at 297,163 to 298,746 GFF3476 GFF3477 - Phosphoprotein phosphatase, at 298,842 to 300,410 GFF3477 Position (kb) 297 298 299Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 296.236 kb on + strand, within GFF3475at 296.237 kb on - strand, within GFF3475at 296.296 kb on + strand, within GFF3475at 296.296 kb on + strand, within GFF3475at 296.296 kb on + strand, within GFF3475at 296.297 kb on - strand, within GFF3475at 296.297 kb on - strand, within GFF3475at 296.297 kb on - strand, within GFF3475at 296.297 kb on - strand, within GFF3475at 296.297 kb on - strand, within GFF3475at 296.297 kb on - strand, within GFF3475at 296.297 kb on - strand, within GFF3475at 296.458 kb on + strand, within GFF3475at 296.458 kb on + strand, within GFF3475at 296.459 kb on - strand, within GFF3475at 296.459 kb on - strand, within GFF3475at 296.459 kb on - strand, within GFF3475at 296.599 kb on + strand, within GFF3475at 296.599 kb on + strand, within GFF3475at 296.599 kb on + strand, within GFF3475at 296.599 kb on + strand, within GFF3475at 296.599 kb on + strand, within GFF3475at 297.118 kb on + strandat 297.118 kb on + strandat 297.119 kb on - strandat 297.119 kb on - strandat 297.127 kb on - strandat 297.150 kb on + strandat 297.150 kb on + strandat 297.150 kb on + strandat 297.150 kb on + strandat 297.151 kb on - strandat 297.151 kb on - strandat 297.151 kb on - strandat 297.151 kb on - strandat 297.151 kb on - strandat 297.151 kb on - strandat 297.151 kb on - strandat 297.445 kb on + strand, within GFF3476at 297.445 kb on + strand, within GFF3476at 297.445 kb on + strand, within GFF3476at 297.445 kb on + strand, within GFF3476at 297.445 kb on + strand, within GFF3476at 297.446 kb on - strand, within GFF3476at 297.446 kb on - strand, within GFF3476at 297.448 kb on + strand, within GFF3476at 297.448 kb on + strand, within GFF3476at 297.448 kb on + strand, within GFF3476at 297.448 kb on + strand, within GFF3476at 297.448 kb on + strand, within GFF3476at 297.449 kb on - strand, within GFF3476at 297.449 kb on - strand, within GFF3476at 297.449 kb on - strand, within GFF3476at 297.547 kb on + strand, within GFF3476at 297.547 kb on + strand, within GFF3476at 297.547 kb on + strand, within GFF3476at 297.547 kb on + strand, within GFF3476at 297.547 kb on + strand, within GFF3476at 297.547 kb on + strand, within GFF3476at 297.548 kb on - strand, within GFF3476at 298.045 kb on + strand, within GFF3476at 298.046 kb on - strand, within GFF3476at 298.112 kb on - strand, within GFF3476at 298.112 kb on - strand, within GFF3476at 298.186 kb on + strand, within GFF3476at 298.186 kb on + strand, within GFF3476at 298.187 kb on - strand, within GFF3476at 298.307 kb on - strand, within GFF3476at 298.351 kb on + strand, within GFF3476at 298.549 kb on + strand, within GFF3476at 298.550 kb on - strand, within GFF3476at 298.550 kb on - strand, within GFF3476at 298.636 kb on + strandat 298.636 kb on + strandat 298.637 kb on - strandat 298.637 kb on - strandat 298.637 kb on - strandat 298.744 kb on + strandat 298.770 kb on + strandat 298.770 kb on + strandat 298.770 kb on + strandat 298.771 kb on - strandat 298.771 kb on - strandat 298.773 kb on + strandat 298.773 kb on + strandat 298.773 kb on + strandat 298.774 kb on - strandat 298.774 kb on - strandat 298.795 kb on + strandat 298.819 kb on + strandat 299.118 kb on + strand, within GFF3477at 299.118 kb on + strand, within GFF3477at 299.119 kb on - strand, within GFF3477at 299.119 kb on - strand, within GFF3477at 299.524 kb on - strand, within GFF3477at 299.529 kb on + strand, within GFF3477at 299.731 kb on - strand, within GFF3477at 299.731 kb on - strand, within GFF3477at 299.731 kb on - strand, within GFF3477

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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296,236 + GFF3475 0.32 -0.7
296,237 - GFF3475 0.32 -0.2
296,296 + GFF3475 0.36 -2.6
296,296 + GFF3475 0.36 +0.3
296,296 + GFF3475 0.36 -0.8
296,297 - GFF3475 0.37 +2.1
296,297 - GFF3475 0.37 -0.4
296,297 - GFF3475 0.37 +0.5
296,297 - GFF3475 0.37 +1.1
296,297 - GFF3475 0.37 -0.9
296,297 - GFF3475 0.37 -1.9
296,297 - GFF3475 0.37 -0.7
296,458 + GFF3475 0.50 -1.4
296,458 + GFF3475 0.50 +1.6
296,459 - GFF3475 0.50 +0.7
296,459 - GFF3475 0.50 +2.3
296,459 - GFF3475 0.50 -0.8
296,599 + GFF3475 0.61 -0.4
296,599 + GFF3475 0.61 -2.4
296,599 + GFF3475 0.61 +0.4
296,599 + GFF3475 0.61 -0.8
296,599 + GFF3475 0.61 -0.6
297,118 + +0.3
297,118 + -0.4
297,119 - +0.3
297,119 - +1.3
297,127 - +0.1
297,150 + -0.5
297,150 + -2.1
297,150 + +0.4
297,150 + +0.4
297,151 - +0.8
297,151 - -1.9
297,151 - -0.3
297,151 - -0.6
297,151 - -1.4
297,151 - +0.2
297,151 - +0.3
297,445 + GFF3476 0.18 +2.2
297,445 + GFF3476 0.18 +0.6
297,445 + GFF3476 0.18 -0.5
297,445 + GFF3476 0.18 +0.3
297,445 + GFF3476 0.18 +1.1
297,446 - GFF3476 0.18 +1.7
297,446 - GFF3476 0.18 -0.7
297,448 + GFF3476 0.18 +0.5
297,448 + GFF3476 0.18 -1.4
297,448 + GFF3476 0.18 +0.6
297,448 + GFF3476 0.18 +1.6
297,448 + GFF3476 0.18 -0.1
297,449 - GFF3476 0.18 -0.7
297,449 - GFF3476 0.18 -2.4
297,449 - GFF3476 0.18 -2.5
297,547 + GFF3476 0.24 +0.3
297,547 + GFF3476 0.24 -1.9
297,547 + GFF3476 0.24 +0.3
297,547 + GFF3476 0.24 +1.0
297,547 + GFF3476 0.24 -0.9
297,547 + GFF3476 0.24 -0.1
297,548 - GFF3476 0.24 +0.4
298,045 + GFF3476 0.56 -1.1
298,046 - GFF3476 0.56 -1.3
298,112 - GFF3476 0.60 -0.7
298,112 - GFF3476 0.60 -0.8
298,186 + GFF3476 0.65 +4.4
298,186 + GFF3476 0.65 -0.1
298,187 - GFF3476 0.65 -0.2
298,307 - GFF3476 0.72 -1.4
298,351 + GFF3476 0.75 -1.2
298,549 + GFF3476 0.88 -0.4
298,550 - GFF3476 0.88 -2.4
298,550 - GFF3476 0.88 -2.8
298,636 + +0.1
298,636 + -3.1
298,637 - -0.3
298,637 - +1.6
298,637 - -0.6
298,744 + -1.8
298,770 + +0.5
298,770 + -0.6
298,770 + -1.1
298,771 - +0.9
298,771 - +2.1
298,773 + -0.4
298,773 + -1.3
298,773 + +2.4
298,774 - -1.1
298,774 - -0.1
298,795 + -0.6
298,819 + +0.4
299,118 + GFF3477 0.18 +0.4
299,118 + GFF3477 0.18 -2.9
299,119 - GFF3477 0.18 +1.0
299,119 - GFF3477 0.18 -2.2
299,524 - GFF3477 0.43 -0.5
299,529 + GFF3477 0.44 +0.6
299,731 - GFF3477 0.57 -1.2
299,731 - GFF3477 0.57 -1.4
299,731 - GFF3477 0.57 -1.9

Or see this region's nucleotide sequence