Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3438 and GFF3439 are separated by 7 nucleotides GFF3439 and GFF3440 are separated by 60 nucleotides GFF3440 and GFF3441 are separated by 5 nucleotides
GFF3438 - Amidohydrolase family protein, at 261,053 to 262,222
GFF3438
GFF3439 - L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17), at 262,230 to 263,612
GFF3439
GFF3440 - FIG00460300: hypothetical protein, at 263,673 to 264,503
GFF3440
GFF3441 - Hypothetical protein VC0266 (sugar utilization related?), at 264,509 to 265,087
GFF3441
Position (kb) 262
263
264 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 261.466 kb on - strand, within GFF3438 at 261.778 kb on + strand, within GFF3438 at 262.085 kb on + strand, within GFF3438 at 262.085 kb on + strand, within GFF3438 at 262.086 kb on - strand, within GFF3438 at 262.139 kb on + strand at 262.139 kb on + strand at 262.142 kb on + strand at 262.143 kb on - strand at 262.181 kb on + strand at 262.251 kb on + strand at 262.251 kb on + strand at 262.659 kb on + strand, within GFF3439 at 262.660 kb on - strand, within GFF3439 at 262.660 kb on - strand, within GFF3439 at 262.660 kb on - strand, within GFF3439 at 263.142 kb on + strand, within GFF3439 at 263.142 kb on + strand, within GFF3439 at 263.142 kb on + strand, within GFF3439 at 263.143 kb on - strand, within GFF3439 at 263.143 kb on - strand, within GFF3439 at 263.145 kb on + strand, within GFF3439 at 263.146 kb on - strand, within GFF3439 at 263.223 kb on + strand, within GFF3439 at 263.223 kb on + strand, within GFF3439 at 263.223 kb on + strand, within GFF3439 at 263.224 kb on - strand, within GFF3439 at 263.224 kb on - strand, within GFF3439 at 263.224 kb on - strand, within GFF3439 at 263.224 kb on - strand, within GFF3439 at 263.224 kb on - strand, within GFF3439 at 263.224 kb on - strand, within GFF3439 at 263.499 kb on + strand at 263.499 kb on + strand at 263.499 kb on + strand at 263.499 kb on + strand at 263.499 kb on + strand at 263.499 kb on + strand at 263.500 kb on - strand at 263.562 kb on + strand at 263.562 kb on + strand at 263.562 kb on + strand at 263.562 kb on + strand at 263.562 kb on + strand at 263.562 kb on + strand at 263.563 kb on - strand at 263.563 kb on - strand at 263.563 kb on - strand at 263.647 kb on + strand at 263.648 kb on - strand at 263.648 kb on - strand at 263.838 kb on + strand, within GFF3440 at 263.839 kb on - strand, within GFF3440 at 263.865 kb on + strand, within GFF3440 at 263.865 kb on + strand, within GFF3440 at 263.865 kb on + strand, within GFF3440 at 263.866 kb on - strand, within GFF3440 at 263.866 kb on - strand, within GFF3440 at 263.866 kb on - strand, within GFF3440 at 263.866 kb on - strand, within GFF3440 at 263.866 kb on - strand, within GFF3440 at 263.866 kb on - strand, within GFF3440 at 264.192 kb on + strand, within GFF3440 at 264.192 kb on + strand, within GFF3440 at 264.193 kb on - strand, within GFF3440 at 264.219 kb on + strand, within GFF3440 at 264.219 kb on + strand, within GFF3440 at 264.220 kb on - strand, within GFF3440
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 261,466 - GFF3438 0.35 +1.1 261,778 + GFF3438 0.62 +1.5 262,085 + GFF3438 0.88 +2.7 262,085 + GFF3438 0.88 +2.3 262,086 - GFF3438 0.88 -0.8 262,139 + -0.3 262,139 + +1.7 262,142 + -0.7 262,143 - +0.1 262,181 + +1.8 262,251 + -1.8 262,251 + +0.6 262,659 + GFF3439 0.31 -0.8 262,660 - GFF3439 0.31 -2.8 262,660 - GFF3439 0.31 +1.3 262,660 - GFF3439 0.31 -0.9 263,142 + GFF3439 0.66 -0.8 263,142 + GFF3439 0.66 -0.7 263,142 + GFF3439 0.66 -0.7 263,143 - GFF3439 0.66 -1.9 263,143 - GFF3439 0.66 -3.9 263,145 + GFF3439 0.66 +1.1 263,146 - GFF3439 0.66 -2.2 263,223 + GFF3439 0.72 +0.8 263,223 + GFF3439 0.72 -0.2 263,223 + GFF3439 0.72 -1.3 263,224 - GFF3439 0.72 -1.6 263,224 - GFF3439 0.72 +0.3 263,224 - GFF3439 0.72 -0.2 263,224 - GFF3439 0.72 -0.5 263,224 - GFF3439 0.72 -0.4 263,224 - GFF3439 0.72 -2.6 263,499 + +1.6 263,499 + -0.9 263,499 + -0.8 263,499 + +0.1 263,499 + -1.8 263,499 + -1.3 263,500 - -0.5 263,562 + -2.0 263,562 + -1.2 263,562 + -2.4 263,562 + -0.8 263,562 + -1.2 263,562 + +1.6 263,563 - +0.1 263,563 - +1.6 263,563 - -2.4 263,647 + +0.5 263,648 - -1.1 263,648 - -0.8 263,838 + GFF3440 0.20 -2.6 263,839 - GFF3440 0.20 +0.6 263,865 + GFF3440 0.23 -0.7 263,865 + GFF3440 0.23 +2.6 263,865 + GFF3440 0.23 -2.3 263,866 - GFF3440 0.23 -1.5 263,866 - GFF3440 0.23 -0.9 263,866 - GFF3440 0.23 -1.7 263,866 - GFF3440 0.23 -3.6 263,866 - GFF3440 0.23 +1.6 263,866 - GFF3440 0.23 +0.0 264,192 + GFF3440 0.62 +0.2 264,192 + GFF3440 0.62 +0.3 264,193 - GFF3440 0.63 -0.7 264,219 + GFF3440 0.66 +1.3 264,219 + GFF3440 0.66 +0.5 264,220 - GFF3440 0.66 +0.5
Or see this region's nucleotide sequence