Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF331 and GFF332 are separated by 2 nucleotides GFF332 and GFF333 are separated by 9 nucleotides GFF333 and GFF334 overlap by 28 nucleotides GFF334 and GFF335 are separated by 84 nucleotides
GFF331 - Nucleoside ABC transporter, permease protein 2, at 365,735 to 366,658
GFF331
GFF332 - hypothetical protein, at 366,661 to 367,122
GFF332
GFF333 - hypothetical protein, at 367,132 to 367,584
GFF333
GFF334 - Transcriptional regulator, AraC family, at 367,557 to 368,390
GFF334
GFF335 - Cytosine deaminase (EC 3.5.4.1), at 368,475 to 369,755
GFF335
Position (kb) 367
368
369 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 366.566 kb on + strand at 366.567 kb on - strand at 366.567 kb on - strand at 366.671 kb on + strand at 366.672 kb on - strand at 366.758 kb on - strand, within GFF332 at 366.758 kb on - strand, within GFF332 at 366.835 kb on + strand, within GFF332 at 366.835 kb on + strand, within GFF332 at 366.835 kb on + strand, within GFF332 at 366.835 kb on + strand, within GFF332 at 366.835 kb on + strand, within GFF332 at 366.836 kb on - strand, within GFF332 at 366.877 kb on + strand, within GFF332 at 366.877 kb on + strand, within GFF332 at 366.877 kb on + strand, within GFF332 at 366.877 kb on + strand, within GFF332 at 366.878 kb on - strand, within GFF332 at 366.878 kb on - strand, within GFF332 at 367.093 kb on + strand at 367.121 kb on - strand at 367.421 kb on - strand, within GFF333 at 367.548 kb on + strand at 367.548 kb on + strand at 367.548 kb on + strand at 367.548 kb on + strand at 367.548 kb on + strand at 367.548 kb on + strand at 367.548 kb on + strand at 367.548 kb on + strand at 367.548 kb on + strand at 367.548 kb on + strand at 367.548 kb on + strand at 367.549 kb on - strand at 367.549 kb on - strand at 367.549 kb on - strand at 367.549 kb on - strand at 367.549 kb on - strand at 367.549 kb on - strand at 367.549 kb on - strand at 367.549 kb on - strand at 367.549 kb on - strand at 367.549 kb on - strand at 367.549 kb on - strand at 367.552 kb on + strand at 367.552 kb on + strand at 367.552 kb on + strand at 367.552 kb on + strand at 367.553 kb on - strand at 367.553 kb on - strand at 367.553 kb on - strand at 367.553 kb on - strand at 367.553 kb on - strand at 367.553 kb on - strand at 367.553 kb on - strand at 367.553 kb on - strand at 367.582 kb on + strand at 367.582 kb on + strand at 367.645 kb on + strand, within GFF334 at 367.646 kb on - strand, within GFF334 at 367.646 kb on - strand, within GFF334 at 367.843 kb on + strand, within GFF334 at 367.843 kb on + strand, within GFF334 at 367.844 kb on - strand, within GFF334 at 367.844 kb on - strand, within GFF334 at 367.844 kb on - strand, within GFF334 at 367.844 kb on - strand, within GFF334 at 368.251 kb on + strand, within GFF334 at 368.252 kb on - strand, within GFF334 at 368.670 kb on + strand, within GFF335 at 368.671 kb on - strand, within GFF335 at 368.781 kb on + strand, within GFF335 at 368.782 kb on - strand, within GFF335 at 368.782 kb on - strand, within GFF335 at 368.782 kb on - strand, within GFF335 at 368.898 kb on + strand, within GFF335 at 368.898 kb on + strand, within GFF335 at 369.228 kb on + strand, within GFF335 at 369.228 kb on + strand, within GFF335 at 369.228 kb on + strand, within GFF335 at 369.228 kb on + strand, within GFF335 at 369.228 kb on + strand, within GFF335 at 369.228 kb on + strand, within GFF335 at 369.228 kb on + strand, within GFF335 at 369.228 kb on + strand, within GFF335 at 369.228 kb on + strand, within GFF335 at 369.229 kb on - strand, within GFF335 at 369.229 kb on - strand, within GFF335 at 369.229 kb on - strand, within GFF335 at 369.229 kb on - strand, within GFF335 at 369.229 kb on - strand, within GFF335 at 369.229 kb on - strand, within GFF335 at 369.229 kb on - strand, within GFF335 at 369.229 kb on - strand, within GFF335 at 369.229 kb on - strand, within GFF335 at 369.229 kb on - strand, within GFF335 at 369.229 kb on - strand, within GFF335 at 369.229 kb on - strand, within GFF335 at 369.229 kb on - strand, within GFF335 at 369.229 kb on - strand, within GFF335 at 369.231 kb on + strand, within GFF335 at 369.231 kb on + strand, within GFF335 at 369.231 kb on + strand, within GFF335 at 369.231 kb on + strand, within GFF335 at 369.231 kb on + strand, within GFF335 at 369.231 kb on + strand, within GFF335 at 369.231 kb on + strand, within GFF335 at 369.232 kb on - strand, within GFF335 at 369.232 kb on - strand, within GFF335 at 369.232 kb on - strand, within GFF335 at 369.232 kb on - strand, within GFF335 at 369.232 kb on - strand, within GFF335 at 369.232 kb on - strand, within GFF335 at 369.232 kb on - strand, within GFF335 at 369.327 kb on + strand, within GFF335 at 369.327 kb on + strand, within GFF335 at 369.328 kb on - strand, within GFF335 at 369.328 kb on - strand, within GFF335 at 369.328 kb on - strand, within GFF335
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 366,566 + +1.1 366,567 - -2.5 366,567 - +0.3 366,671 + -0.0 366,672 - -0.6 366,758 - GFF332 0.21 -1.8 366,758 - GFF332 0.21 +1.0 366,835 + GFF332 0.38 -1.7 366,835 + GFF332 0.38 -2.6 366,835 + GFF332 0.38 -3.5 366,835 + GFF332 0.38 +0.0 366,835 + GFF332 0.38 -0.5 366,836 - GFF332 0.38 +0.4 366,877 + GFF332 0.47 -1.3 366,877 + GFF332 0.47 -0.5 366,877 + GFF332 0.47 -0.5 366,877 + GFF332 0.47 -0.4 366,878 - GFF332 0.47 -1.6 366,878 - GFF332 0.47 +2.5 367,093 + -0.7 367,121 - +0.2 367,421 - GFF333 0.64 -1.5 367,548 + -1.4 367,548 + -0.9 367,548 + +0.7 367,548 + -0.6 367,548 + -0.4 367,548 + -0.2 367,548 + -0.1 367,548 + -0.6 367,548 + -1.0 367,548 + -2.2 367,548 + +2.4 367,549 - +2.9 367,549 - -1.1 367,549 - -1.6 367,549 - -0.1 367,549 - +0.8 367,549 - -0.1 367,549 - +0.9 367,549 - -0.6 367,549 - -2.4 367,549 - -0.4 367,549 - +1.5 367,552 + -1.7 367,552 + -0.5 367,552 + -1.1 367,552 + +0.3 367,553 - +0.3 367,553 - +0.6 367,553 - +2.1 367,553 - +0.5 367,553 - -1.6 367,553 - -1.3 367,553 - -2.0 367,553 - -1.1 367,582 + +1.1 367,582 + +0.7 367,645 + GFF334 0.11 +0.9 367,646 - GFF334 0.11 -3.6 367,646 - GFF334 0.11 -1.7 367,843 + GFF334 0.34 +0.2 367,843 + GFF334 0.34 -2.8 367,844 - GFF334 0.34 -0.4 367,844 - GFF334 0.34 -2.1 367,844 - GFF334 0.34 -3.9 367,844 - GFF334 0.34 -0.8 368,251 + GFF334 0.83 +0.7 368,252 - GFF334 0.83 -2.9 368,670 + GFF335 0.15 +0.1 368,671 - GFF335 0.15 -3.5 368,781 + GFF335 0.24 +1.0 368,782 - GFF335 0.24 -0.4 368,782 - GFF335 0.24 -0.6 368,782 - GFF335 0.24 -2.4 368,898 + GFF335 0.33 -1.1 368,898 + GFF335 0.33 -3.7 369,228 + GFF335 0.59 -0.7 369,228 + GFF335 0.59 +0.6 369,228 + GFF335 0.59 +0.9 369,228 + GFF335 0.59 +0.1 369,228 + GFF335 0.59 +2.8 369,228 + GFF335 0.59 -1.0 369,228 + GFF335 0.59 -0.5 369,228 + GFF335 0.59 -0.4 369,228 + GFF335 0.59 -0.2 369,229 - GFF335 0.59 +0.0 369,229 - GFF335 0.59 +2.1 369,229 - GFF335 0.59 -1.3 369,229 - GFF335 0.59 -0.8 369,229 - GFF335 0.59 -1.1 369,229 - GFF335 0.59 -0.7 369,229 - GFF335 0.59 -1.0 369,229 - GFF335 0.59 +1.7 369,229 - GFF335 0.59 -0.9 369,229 - GFF335 0.59 -1.3 369,229 - GFF335 0.59 -0.0 369,229 - GFF335 0.59 -1.8 369,229 - GFF335 0.59 -1.1 369,229 - GFF335 0.59 -2.8 369,231 + GFF335 0.59 -0.6 369,231 + GFF335 0.59 +2.5 369,231 + GFF335 0.59 +1.1 369,231 + GFF335 0.59 -0.1 369,231 + GFF335 0.59 -2.8 369,231 + GFF335 0.59 -0.2 369,231 + GFF335 0.59 +1.9 369,232 - GFF335 0.59 +2.3 369,232 - GFF335 0.59 +0.5 369,232 - GFF335 0.59 +0.6 369,232 - GFF335 0.59 -1.3 369,232 - GFF335 0.59 -2.9 369,232 - GFF335 0.59 -3.5 369,232 - GFF335 0.59 -0.1 369,327 + GFF335 0.67 +1.1 369,327 + GFF335 0.67 +0.9 369,328 - GFF335 0.67 +0.3 369,328 - GFF335 0.67 -3.1 369,328 - GFF335 0.67 -0.1
Or see this region's nucleotide sequence