Strain Fitness in Variovorax sp. SCN45 around GFF3338

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3336 and GFF3337 are separated by 38 nucleotidesGFF3337 and GFF3338 are separated by 139 nucleotidesGFF3338 and GFF3339 are separated by 15 nucleotidesGFF3339 and GFF3340 are separated by 16 nucleotides GFF3336 - tRNA-5-carboxymethylaminomethyl-2-thiouridine(34) synthesis protein MnmG, at 159,998 to 161,947 GFF3336 GFF3337 - 16S rRNA (guanine(527)-N(7))-methyltransferase (EC 2.1.1.170), at 161,986 to 162,585 GFF3337 GFF3338 - Threonine efflux protein, at 162,725 to 163,339 GFF3338 GFF3339 - Chromosome (plasmid) partitioning protein ParA, at 163,355 to 164,275 GFF3339 GFF3340 - FIG00932469: hypothetical protein, at 164,292 to 164,837 GFF3340 Position (kb) 162 163 164Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 161.955 kb on + strandat 161.955 kb on + strandat 161.955 kb on + strandat 161.955 kb on + strandat 161.955 kb on + strandat 161.955 kb on + strandat 161.955 kb on + strandat 161.955 kb on + strandat 161.955 kb on + strandat 161.955 kb on + strandat 161.955 kb on + strandat 161.956 kb on - strandat 161.956 kb on - strandat 161.956 kb on - strandat 161.956 kb on - strandat 161.961 kb on + strandat 161.961 kb on + strandat 161.961 kb on + strandat 161.962 kb on - strandat 161.962 kb on - strandat 161.962 kb on - strandat 161.962 kb on - strandat 161.962 kb on - strandat 162.031 kb on + strandat 162.031 kb on + strandat 162.031 kb on + strandat 162.032 kb on - strandat 162.032 kb on - strandat 162.064 kb on + strand, within GFF3337at 162.064 kb on + strand, within GFF3337at 162.064 kb on + strand, within GFF3337at 162.064 kb on + strand, within GFF3337at 162.064 kb on + strand, within GFF3337at 162.065 kb on - strand, within GFF3337at 162.065 kb on - strand, within GFF3337at 162.065 kb on - strand, within GFF3337at 162.065 kb on - strand, within GFF3337at 162.065 kb on - strand, within GFF3337at 162.065 kb on - strand, within GFF3337at 162.065 kb on - strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.359 kb on + strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.459 kb on + strand, within GFF3337at 162.459 kb on + strand, within GFF3337at 162.459 kb on + strand, within GFF3337at 162.459 kb on + strand, within GFF3337at 162.460 kb on - strand, within GFF3337at 162.460 kb on - strand, within GFF3337at 162.460 kb on - strand, within GFF3337at 162.611 kb on - strandat 162.668 kb on + strandat 162.669 kb on - strandat 162.669 kb on - strandat 162.669 kb on - strandat 162.743 kb on + strandat 162.743 kb on + strandat 162.744 kb on - strandat 162.744 kb on - strandat 162.930 kb on - strand, within GFF3338at 162.971 kb on + strand, within GFF3338at 162.971 kb on + strand, within GFF3338at 162.971 kb on + strand, within GFF3338at 162.971 kb on + strand, within GFF3338at 162.971 kb on + strand, within GFF3338at 162.971 kb on + strand, within GFF3338at 162.971 kb on + strand, within GFF3338at 162.971 kb on + strand, within GFF3338at 162.971 kb on + strand, within GFF3338at 162.971 kb on + strand, within GFF3338at 162.971 kb on + strand, within GFF3338at 162.971 kb on + strand, within GFF3338at 162.971 kb on + strand, within GFF3338at 162.971 kb on + strand, within GFF3338at 162.971 kb on + strand, within GFF3338at 162.971 kb on + strand, within GFF3338at 162.972 kb on - strand, within GFF3338at 162.972 kb on - strand, within GFF3338at 162.972 kb on - strand, within GFF3338at 162.972 kb on - strand, within GFF3338at 162.972 kb on - strand, within GFF3338at 162.972 kb on - strand, within GFF3338at 162.972 kb on - strand, within GFF3338at 162.972 kb on - strand, within GFF3338at 162.972 kb on - strand, within GFF3338at 162.972 kb on - strand, within GFF3338at 162.972 kb on - strand, within GFF3338at 163.103 kb on + strand, within GFF3338at 163.103 kb on + strand, within GFF3338at 163.103 kb on + strand, within GFF3338at 163.103 kb on + strand, within GFF3338at 163.103 kb on + strand, within GFF3338at 163.103 kb on + strand, within GFF3338at 163.103 kb on + strand, within GFF3338at 163.103 kb on + strand, within GFF3338at 163.103 kb on + strand, within GFF3338at 163.103 kb on + strand, within GFF3338at 163.103 kb on + strand, within GFF3338at 163.103 kb on + strand, within GFF3338at 163.103 kb on + strand, within GFF3338at 163.103 kb on + strand, within GFF3338at 163.103 kb on + strand, within GFF3338at 163.103 kb on + strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.202 kb on + strand, within GFF3338at 163.203 kb on - strand, within GFF3338

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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161,955 + +1.1
161,955 + -2.0
161,955 + -1.2
161,955 + +0.9
161,955 + +0.2
161,955 + -0.8
161,955 + +1.8
161,955 + -1.7
161,955 + -0.4
161,955 + -1.1
161,955 + -1.8
161,956 - -3.2
161,956 - +2.6
161,956 - +0.0
161,956 - +1.8
161,961 + +0.2
161,961 + +0.7
161,961 + -0.4
161,962 - +1.1
161,962 - -3.2
161,962 - -0.2
161,962 - -2.5
161,962 - -1.9
162,031 + -1.5
162,031 + +0.3
162,031 + +0.7
162,032 - +0.3
162,032 - -2.4
162,064 + GFF3337 0.13 +1.1
162,064 + GFF3337 0.13 +0.2
162,064 + GFF3337 0.13 -0.2
162,064 + GFF3337 0.13 -0.1
162,064 + GFF3337 0.13 -0.4
162,065 - GFF3337 0.13 -0.6
162,065 - GFF3337 0.13 -0.0
162,065 - GFF3337 0.13 -0.4
162,065 - GFF3337 0.13 -3.6
162,065 - GFF3337 0.13 +2.8
162,065 - GFF3337 0.13 +0.7
162,065 - GFF3337 0.13 -0.5
162,358 + GFF3337 0.62 -0.8
162,358 + GFF3337 0.62 +0.1
162,358 + GFF3337 0.62 +0.7
162,358 + GFF3337 0.62 -1.1
162,358 + GFF3337 0.62 -0.8
162,358 + GFF3337 0.62 -2.3
162,358 + GFF3337 0.62 -0.9
162,358 + GFF3337 0.62 +0.3
162,358 + GFF3337 0.62 -1.4
162,358 + GFF3337 0.62 -0.2
162,358 + GFF3337 0.62 -1.1
162,358 + GFF3337 0.62 -0.7
162,358 + GFF3337 0.62 -0.2
162,358 + GFF3337 0.62 -1.4
162,358 + GFF3337 0.62 +1.2
162,358 + GFF3337 0.62 -1.4
162,358 + GFF3337 0.62 +1.9
162,358 + GFF3337 0.62 -0.5
162,358 + GFF3337 0.62 +1.1
162,358 + GFF3337 0.62 -0.8
162,358 + GFF3337 0.62 -1.7
162,358 + GFF3337 0.62 -1.4
162,358 + GFF3337 0.62 -0.2
162,358 + GFF3337 0.62 +0.5
162,358 + GFF3337 0.62 +0.3
162,358 + GFF3337 0.62 +1.9
162,358 + GFF3337 0.62 +0.1
162,358 + GFF3337 0.62 -2.7
162,358 + GFF3337 0.62 -1.1
162,358 + GFF3337 0.62 +0.4
162,358 + GFF3337 0.62 -0.7
162,359 + GFF3337 0.62 -0.4
162,359 - GFF3337 0.62 -2.2
162,359 - GFF3337 0.62 -1.1
162,359 - GFF3337 0.62 -0.7
162,359 - GFF3337 0.62 -1.7
162,359 - GFF3337 0.62 -2.4
162,359 - GFF3337 0.62 +1.8
162,359 - GFF3337 0.62 -1.7
162,359 - GFF3337 0.62 +2.7
162,359 - GFF3337 0.62 -1.8
162,359 - GFF3337 0.62 -1.5
162,359 - GFF3337 0.62 +0.9
162,359 - GFF3337 0.62 +1.5
162,359 - GFF3337 0.62 -0.1
162,359 - GFF3337 0.62 -0.2
162,359 - GFF3337 0.62 -0.7
162,359 - GFF3337 0.62 -2.2
162,359 - GFF3337 0.62 +0.0
162,359 - GFF3337 0.62 +2.6
162,359 - GFF3337 0.62 -2.2
162,359 - GFF3337 0.62 -0.7
162,359 - GFF3337 0.62 +0.2
162,359 - GFF3337 0.62 +0.5
162,359 - GFF3337 0.62 +0.5
162,359 - GFF3337 0.62 -2.7
162,359 - GFF3337 0.62 -3.4
162,359 - GFF3337 0.62 -0.5
162,359 - GFF3337 0.62 +1.4
162,459 + GFF3337 0.79 -0.0
162,459 + GFF3337 0.79 -0.4
162,459 + GFF3337 0.79 -1.7
162,459 + GFF3337 0.79 -0.7
162,460 - GFF3337 0.79 -2.8
162,460 - GFF3337 0.79 -1.9
162,460 - GFF3337 0.79 -1.7
162,611 - -1.7
162,668 + +1.6
162,669 - +2.6
162,669 - -0.9
162,669 - -0.4
162,743 + -0.7
162,743 + +1.6
162,744 - -2.8
162,744 - -0.6
162,930 - GFF3338 0.33 -0.4
162,971 + GFF3338 0.40 -0.8
162,971 + GFF3338 0.40 +0.2
162,971 + GFF3338 0.40 -2.2
162,971 + GFF3338 0.40 -3.8
162,971 + GFF3338 0.40 +3.6
162,971 + GFF3338 0.40 -1.3
162,971 + GFF3338 0.40 -2.1
162,971 + GFF3338 0.40 -0.9
162,971 + GFF3338 0.40 -1.8
162,971 + GFF3338 0.40 -1.3
162,971 + GFF3338 0.40 -2.4
162,971 + GFF3338 0.40 +0.2
162,971 + GFF3338 0.40 -0.8
162,971 + GFF3338 0.40 -1.0
162,971 + GFF3338 0.40 +0.3
162,971 + GFF3338 0.40 -0.5
162,972 - GFF3338 0.40 +0.6
162,972 - GFF3338 0.40 -0.3
162,972 - GFF3338 0.40 +0.4
162,972 - GFF3338 0.40 +1.6
162,972 - GFF3338 0.40 -0.2
162,972 - GFF3338 0.40 -0.9
162,972 - GFF3338 0.40 +0.6
162,972 - GFF3338 0.40 -0.8
162,972 - GFF3338 0.40 -0.5
162,972 - GFF3338 0.40 +0.1
162,972 - GFF3338 0.40 -0.7
163,103 + GFF3338 0.61 -0.7
163,103 + GFF3338 0.61 +1.1
163,103 + GFF3338 0.61 -0.7
163,103 + GFF3338 0.61 -2.0
163,103 + GFF3338 0.61 -0.5
163,103 + GFF3338 0.61 +1.3
163,103 + GFF3338 0.61 +0.6
163,103 + GFF3338 0.61 -1.7
163,103 + GFF3338 0.61 -2.4
163,103 + GFF3338 0.61 -0.4
163,103 + GFF3338 0.61 +0.8
163,103 + GFF3338 0.61 +0.3
163,103 + GFF3338 0.61 +0.1
163,103 + GFF3338 0.61 -1.1
163,103 + GFF3338 0.61 +1.1
163,103 + GFF3338 0.61 -1.3
163,104 - GFF3338 0.62 +0.6
163,104 - GFF3338 0.62 -3.2
163,104 - GFF3338 0.62 +1.0
163,104 - GFF3338 0.62 -2.0
163,104 - GFF3338 0.62 -1.1
163,104 - GFF3338 0.62 -0.2
163,104 - GFF3338 0.62 -0.2
163,104 - GFF3338 0.62 +1.9
163,104 - GFF3338 0.62 +0.8
163,104 - GFF3338 0.62 -1.8
163,104 - GFF3338 0.62 +0.6
163,104 - GFF3338 0.62 -0.4
163,104 - GFF3338 0.62 +1.6
163,104 - GFF3338 0.62 +1.9
163,104 - GFF3338 0.62 -1.4
163,104 - GFF3338 0.62 +2.2
163,104 - GFF3338 0.62 -2.1
163,104 - GFF3338 0.62 -0.5
163,104 - GFF3338 0.62 -1.8
163,104 - GFF3338 0.62 -0.2
163,104 - GFF3338 0.62 -0.5
163,104 - GFF3338 0.62 -0.4
163,104 - GFF3338 0.62 -1.4
163,104 - GFF3338 0.62 -2.3
163,104 - GFF3338 0.62 +2.6
163,104 - GFF3338 0.62 -1.0
163,104 - GFF3338 0.62 -1.2
163,104 - GFF3338 0.62 +0.1
163,104 - GFF3338 0.62 -3.6
163,202 + GFF3338 0.78 -0.9
163,203 - GFF3338 0.78 +0.7

Or see this region's nucleotide sequence