Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3163 and GFF3164 are separated by 26 nucleotides GFF3164 and GFF3165 overlap by 4 nucleotides
GFF3163 - Transcriptional regulator, IclR family, at 602,292 to 603,125
GFF3163
GFF3164 - Aerobic cobaltochelatase CobS subunit (EC 6.6.1.2), at 603,152 to 604,135
GFF3164
GFF3165 - Aerobic cobaltochelatase CobT subunit (EC 6.6.1.2), at 604,132 to 605,868
GFF3165
Position (kb) 603
604
605 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 602.216 kb on + strand at 602.217 kb on - strand at 602.218 kb on + strand at 602.218 kb on + strand at 602.218 kb on + strand at 602.218 kb on + strand at 602.218 kb on + strand at 602.218 kb on + strand at 602.219 kb on - strand at 602.219 kb on - strand at 602.219 kb on - strand at 602.219 kb on - strand at 602.219 kb on - strand at 602.219 kb on - strand at 602.219 kb on - strand at 602.219 kb on - strand at 602.291 kb on + strand at 602.526 kb on + strand, within GFF3163 at 602.676 kb on + strand, within GFF3163 at 602.676 kb on + strand, within GFF3163 at 602.716 kb on - strand, within GFF3163 at 602.832 kb on + strand, within GFF3163 at 602.833 kb on - strand, within GFF3163 at 602.833 kb on - strand, within GFF3163 at 603.281 kb on + strand, within GFF3164 at 603.282 kb on - strand, within GFF3164 at 603.282 kb on - strand, within GFF3164 at 603.569 kb on + strand, within GFF3164 at 603.569 kb on + strand, within GFF3164 at 603.654 kb on - strand, within GFF3164 at 603.732 kb on - strand, within GFF3164 at 603.798 kb on - strand, within GFF3164 at 604.966 kb on + strand, within GFF3165 at 604.966 kb on + strand, within GFF3165
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 602,216 + -1.1 602,217 - -1.2 602,218 + -0.1 602,218 + -0.6 602,218 + +0.1 602,218 + -0.8 602,218 + +0.6 602,218 + -3.4 602,219 - -1.7 602,219 - -0.6 602,219 - -1.1 602,219 - -3.3 602,219 - -2.7 602,219 - +0.0 602,219 - +0.6 602,219 - -0.3 602,291 + -1.9 602,526 + GFF3163 0.28 +0.0 602,676 + GFF3163 0.46 +2.1 602,676 + GFF3163 0.46 -2.3 602,716 - GFF3163 0.51 -3.4 602,832 + GFF3163 0.65 +0.5 602,833 - GFF3163 0.65 -1.6 602,833 - GFF3163 0.65 +0.1 603,281 + GFF3164 0.13 +1.0 603,282 - GFF3164 0.13 -1.5 603,282 - GFF3164 0.13 -2.3 603,569 + GFF3164 0.42 +0.9 603,569 + GFF3164 0.42 +0.2 603,654 - GFF3164 0.51 +2.0 603,732 - GFF3164 0.59 -2.4 603,798 - GFF3164 0.66 -2.8 604,966 + GFF3165 0.48 -1.1 604,966 + GFF3165 0.48 +0.2
Or see this region's nucleotide sequence