Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3119 and GFF3120 are separated by 172 nucleotides GFF3120 and GFF3121 are separated by 258 nucleotides GFF3121 and GFF3122 are separated by 1 nucleotides
GFF3119 - Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11), at 547,215 to 548,225
GFF3119
GFF3120 - no description, at 548,398 to 549,240
GFF3120
GFF3121 - hypothetical protein, at 549,499 to 549,912
GFF3121
GFF3122 - ATP/GTP-binding protein, at 549,914 to 551,791
GFF3122
Position (kb) 548
549
550 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 548.330 kb on - strand at 548.330 kb on - strand at 548.330 kb on - strand at 548.419 kb on + strand at 548.419 kb on + strand at 548.419 kb on + strand at 548.420 kb on - strand at 548.420 kb on - strand at 548.420 kb on - strand at 548.420 kb on - strand at 548.569 kb on + strand, within GFF3120 at 548.569 kb on + strand, within GFF3120 at 548.570 kb on - strand, within GFF3120 at 548.570 kb on - strand, within GFF3120 at 548.570 kb on - strand, within GFF3120 at 548.570 kb on - strand, within GFF3120 at 548.573 kb on + strand, within GFF3120 at 548.573 kb on + strand, within GFF3120 at 548.573 kb on + strand, within GFF3120 at 548.651 kb on + strand, within GFF3120 at 548.651 kb on + strand, within GFF3120 at 548.652 kb on - strand, within GFF3120 at 548.652 kb on - strand, within GFF3120 at 548.652 kb on - strand, within GFF3120 at 548.652 kb on - strand, within GFF3120 at 548.652 kb on - strand, within GFF3120 at 548.660 kb on - strand, within GFF3120 at 548.660 kb on - strand, within GFF3120 at 548.678 kb on + strand, within GFF3120 at 548.678 kb on + strand, within GFF3120 at 548.678 kb on + strand, within GFF3120 at 548.678 kb on + strand, within GFF3120 at 548.678 kb on + strand, within GFF3120 at 548.678 kb on + strand, within GFF3120 at 548.679 kb on - strand, within GFF3120 at 548.679 kb on - strand, within GFF3120 at 548.679 kb on - strand, within GFF3120 at 548.679 kb on - strand, within GFF3120 at 548.679 kb on - strand, within GFF3120 at 548.680 kb on + strand, within GFF3120 at 548.680 kb on + strand, within GFF3120 at 548.681 kb on - strand, within GFF3120 at 548.724 kb on + strand, within GFF3120 at 548.725 kb on - strand, within GFF3120 at 548.725 kb on - strand, within GFF3120 at 548.864 kb on - strand, within GFF3120 at 548.897 kb on + strand, within GFF3120 at 548.898 kb on - strand, within GFF3120 at 548.915 kb on + strand, within GFF3120 at 548.916 kb on - strand, within GFF3120 at 549.042 kb on - strand, within GFF3120 at 549.042 kb on - strand, within GFF3120 at 549.078 kb on - strand, within GFF3120 at 549.083 kb on + strand, within GFF3120 at 549.135 kb on + strand, within GFF3120 at 549.135 kb on + strand, within GFF3120 at 549.136 kb on - strand, within GFF3120 at 549.140 kb on - strand, within GFF3120 at 549.140 kb on - strand, within GFF3120 at 549.140 kb on - strand, within GFF3120 at 549.140 kb on - strand, within GFF3120 at 549.140 kb on - strand, within GFF3120 at 549.140 kb on - strand, within GFF3120 at 549.164 kb on + strand at 549.164 kb on + strand at 549.165 kb on - strand at 549.165 kb on - strand at 549.165 kb on - strand at 549.165 kb on - strand at 549.193 kb on + strand at 549.194 kb on + strand at 549.195 kb on - strand at 549.195 kb on - strand at 549.195 kb on - strand at 549.195 kb on - strand at 549.195 kb on - strand at 549.195 kb on - strand at 549.198 kb on + strand at 549.198 kb on + strand at 549.198 kb on + strand at 549.198 kb on + strand at 549.198 kb on + strand at 549.198 kb on + strand at 549.198 kb on + strand at 549.198 kb on + strand at 549.199 kb on - strand at 549.199 kb on - strand at 549.199 kb on - strand at 549.199 kb on - strand at 549.258 kb on + strand at 549.320 kb on + strand at 549.320 kb on + strand at 549.321 kb on - strand at 549.321 kb on - strand at 549.321 kb on - strand at 549.321 kb on - strand at 549.382 kb on + strand at 549.383 kb on - strand at 549.438 kb on + strand at 549.438 kb on + strand at 549.439 kb on - strand at 549.439 kb on - strand at 549.444 kb on + strand at 549.444 kb on + strand at 549.444 kb on + strand at 549.444 kb on + strand at 549.444 kb on + strand at 549.445 kb on - strand at 549.445 kb on - strand at 549.445 kb on - strand at 549.540 kb on - strand at 549.623 kb on + strand, within GFF3121 at 549.623 kb on + strand, within GFF3121 at 549.624 kb on - strand, within GFF3121 at 549.758 kb on - strand, within GFF3121 at 549.855 kb on - strand, within GFF3121 at 549.923 kb on + strand at 549.995 kb on + strand at 549.995 kb on + strand at 550.061 kb on + strand at 550.062 kb on - strand at 550.062 kb on - strand at 550.062 kb on - strand at 550.062 kb on - strand at 550.074 kb on + strand at 550.074 kb on + strand at 550.209 kb on + strand, within GFF3122 at 550.210 kb on - strand, within GFF3122 at 550.237 kb on + strand, within GFF3122 at 550.237 kb on + strand, within GFF3122 at 550.238 kb on - strand, within GFF3122 at 550.238 kb on - strand, within GFF3122
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 548,330 - -2.1 548,330 - -0.3 548,330 - -1.9 548,419 + +1.1 548,419 + +0.7 548,419 + -2.4 548,420 - +0.2 548,420 - -0.8 548,420 - -1.7 548,420 - -0.4 548,569 + GFF3120 0.20 -2.7 548,569 + GFF3120 0.20 +0.3 548,570 - GFF3120 0.20 +1.5 548,570 - GFF3120 0.20 -1.1 548,570 - GFF3120 0.20 -4.3 548,570 - GFF3120 0.20 -0.3 548,573 + GFF3120 0.21 -0.3 548,573 + GFF3120 0.21 -0.8 548,573 + GFF3120 0.21 -0.4 548,651 + GFF3120 0.30 +0.3 548,651 + GFF3120 0.30 -0.0 548,652 - GFF3120 0.30 -0.6 548,652 - GFF3120 0.30 -0.1 548,652 - GFF3120 0.30 +1.0 548,652 - GFF3120 0.30 -1.0 548,652 - GFF3120 0.30 -1.0 548,660 - GFF3120 0.31 -0.9 548,660 - GFF3120 0.31 -0.0 548,678 + GFF3120 0.33 +0.0 548,678 + GFF3120 0.33 -1.0 548,678 + GFF3120 0.33 -1.2 548,678 + GFF3120 0.33 -0.1 548,678 + GFF3120 0.33 -1.2 548,678 + GFF3120 0.33 -1.0 548,679 - GFF3120 0.33 -0.1 548,679 - GFF3120 0.33 -1.6 548,679 - GFF3120 0.33 +0.7 548,679 - GFF3120 0.33 +0.1 548,679 - GFF3120 0.33 -3.5 548,680 + GFF3120 0.33 +0.6 548,680 + GFF3120 0.33 +0.3 548,681 - GFF3120 0.34 -0.3 548,724 + GFF3120 0.39 -0.1 548,725 - GFF3120 0.39 -1.0 548,725 - GFF3120 0.39 -2.0 548,864 - GFF3120 0.55 -2.3 548,897 + GFF3120 0.59 -1.4 548,898 - GFF3120 0.59 +0.6 548,915 + GFF3120 0.61 -0.3 548,916 - GFF3120 0.61 -0.4 549,042 - GFF3120 0.76 -0.1 549,042 - GFF3120 0.76 -0.3 549,078 - GFF3120 0.81 -0.7 549,083 + GFF3120 0.81 -1.0 549,135 + GFF3120 0.87 -1.3 549,135 + GFF3120 0.87 -0.6 549,136 - GFF3120 0.88 +0.4 549,140 - GFF3120 0.88 +1.2 549,140 - GFF3120 0.88 -2.6 549,140 - GFF3120 0.88 +0.0 549,140 - GFF3120 0.88 -0.7 549,140 - GFF3120 0.88 +0.8 549,140 - GFF3120 0.88 -0.2 549,164 + -1.8 549,164 + -1.0 549,165 - -2.8 549,165 - +0.2 549,165 - -0.4 549,165 - -0.5 549,193 + +1.4 549,194 + +0.2 549,195 - +1.2 549,195 - -3.2 549,195 - +3.0 549,195 - +0.8 549,195 - -1.2 549,195 - +1.2 549,198 + -0.8 549,198 + +1.2 549,198 + -0.8 549,198 + -0.7 549,198 + +1.9 549,198 + -1.1 549,198 + -2.1 549,198 + -1.9 549,199 - -2.8 549,199 - -1.4 549,199 - -3.5 549,199 - -0.9 549,258 + -1.1 549,320 + -1.1 549,320 + -1.2 549,321 - -1.5 549,321 - +1.4 549,321 - -0.4 549,321 - +0.6 549,382 + -2.5 549,383 - +0.2 549,438 + +0.2 549,438 + +0.5 549,439 - -1.7 549,439 - +3.2 549,444 + +1.2 549,444 + +0.5 549,444 + -3.2 549,444 + +0.5 549,444 + -0.0 549,445 - -0.8 549,445 - +0.7 549,445 - +0.3 549,540 - -2.5 549,623 + GFF3121 0.30 +1.3 549,623 + GFF3121 0.30 -0.7 549,624 - GFF3121 0.30 +0.2 549,758 - GFF3121 0.63 +0.6 549,855 - GFF3121 0.86 +1.2 549,923 + +0.3 549,995 + +0.4 549,995 + -1.4 550,061 + -1.0 550,062 - +0.2 550,062 - +1.2 550,062 - -3.0 550,062 - +0.0 550,074 + -0.1 550,074 + -2.8 550,209 + GFF3122 0.16 -0.1 550,210 - GFF3122 0.16 +0.4 550,237 + GFF3122 0.17 -0.8 550,237 + GFF3122 0.17 -3.1 550,238 - GFF3122 0.17 -1.7 550,238 - GFF3122 0.17 +1.4
Or see this region's nucleotide sequence