Strain Fitness in Variovorax sp. SCN45 around GFF2983

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2981 and GFF2982 overlap by 4 nucleotidesGFF2982 and GFF2983 are separated by 14 nucleotidesGFF2983 and GFF2984 are separated by 87 nucleotides GFF2981 - no description, at 411,914 to 412,807 GFF2981 GFF2982 - Histone acetyltransferase HPA2 and related acetyltransferases, at 412,804 to 413,433 GFF2982 GFF2983 - Transcriptional regulator YfeR, LysR family, at 413,448 to 414,401 GFF2983 GFF2984 - Adenosine deaminase (EC 3.5.4.4), at 414,489 to 415,586 GFF2984 Position (kb) 413 414 415Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 412.619 kb on + strand, within GFF2981at 412.619 kb on + strand, within GFF2981at 412.619 kb on + strand, within GFF2981at 412.620 kb on - strand, within GFF2981at 412.620 kb on - strand, within GFF2981at 413.029 kb on + strand, within GFF2982at 413.029 kb on + strand, within GFF2982at 413.029 kb on + strand, within GFF2982at 413.029 kb on + strand, within GFF2982at 413.030 kb on - strand, within GFF2982at 413.030 kb on - strand, within GFF2982at 413.030 kb on - strand, within GFF2982at 413.030 kb on - strand, within GFF2982at 413.030 kb on - strand, within GFF2982at 413.030 kb on - strand, within GFF2982at 413.030 kb on - strand, within GFF2982at 413.030 kb on - strand, within GFF2982at 413.030 kb on - strand, within GFF2982at 413.035 kb on + strand, within GFF2982at 413.036 kb on - strand, within GFF2982at 413.036 kb on - strand, within GFF2982at 413.036 kb on - strand, within GFF2982at 413.036 kb on - strand, within GFF2982at 413.071 kb on + strand, within GFF2982at 413.072 kb on - strand, within GFF2982at 413.072 kb on - strand, within GFF2982at 413.093 kb on + strand, within GFF2982at 413.094 kb on - strand, within GFF2982at 413.094 kb on - strand, within GFF2982at 413.094 kb on - strand, within GFF2982at 413.094 kb on - strand, within GFF2982at 413.094 kb on - strand, within GFF2982at 413.143 kb on + strand, within GFF2982at 413.144 kb on - strand, within GFF2982at 413.144 kb on - strand, within GFF2982at 413.155 kb on + strand, within GFF2982at 413.155 kb on + strand, within GFF2982at 413.155 kb on + strand, within GFF2982at 413.155 kb on + strand, within GFF2982at 413.185 kb on + strand, within GFF2982at 413.279 kb on - strand, within GFF2982at 413.320 kb on + strand, within GFF2982at 413.320 kb on + strand, within GFF2982at 413.320 kb on + strand, within GFF2982at 413.321 kb on - strand, within GFF2982at 413.321 kb on - strand, within GFF2982at 413.321 kb on - strand, within GFF2982at 413.321 kb on - strand, within GFF2982at 413.572 kb on + strand, within GFF2983at 413.572 kb on + strand, within GFF2983at 413.653 kb on + strand, within GFF2983at 413.653 kb on + strand, within GFF2983at 413.653 kb on + strand, within GFF2983at 413.653 kb on + strand, within GFF2983at 413.653 kb on + strand, within GFF2983at 413.653 kb on + strand, within GFF2983at 413.653 kb on + strand, within GFF2983at 413.654 kb on - strand, within GFF2983at 413.654 kb on - strand, within GFF2983at 413.654 kb on - strand, within GFF2983at 413.654 kb on - strand, within GFF2983at 413.654 kb on - strand, within GFF2983at 413.654 kb on - strand, within GFF2983at 413.654 kb on - strand, within GFF2983at 413.654 kb on - strand, within GFF2983at 413.654 kb on - strand, within GFF2983at 413.701 kb on + strand, within GFF2983at 413.702 kb on - strand, within GFF2983at 413.716 kb on + strand, within GFF2983at 414.459 kb on + strandat 414.473 kb on + strandat 414.473 kb on + strandat 414.473 kb on + strandat 414.474 kb on - strandat 414.476 kb on + strandat 414.476 kb on + strandat 414.476 kb on + strandat 414.477 kb on - strandat 414.477 kb on - strandat 414.654 kb on + strand, within GFF2984at 414.654 kb on + strand, within GFF2984at 414.655 kb on - strand, within GFF2984at 414.655 kb on - strand, within GFF2984at 414.655 kb on - strand, within GFF2984at 414.738 kb on + strand, within GFF2984at 414.739 kb on - strand, within GFF2984at 414.739 kb on - strand, within GFF2984at 414.756 kb on + strand, within GFF2984at 414.756 kb on + strand, within GFF2984at 414.757 kb on - strand, within GFF2984at 414.757 kb on - strand, within GFF2984at 414.789 kb on + strand, within GFF2984at 414.789 kb on + strand, within GFF2984at 415.062 kb on + strand, within GFF2984at 415.182 kb on + strand, within GFF2984at 415.182 kb on + strand, within GFF2984at 415.183 kb on - strand, within GFF2984at 415.183 kb on - strand, within GFF2984at 415.183 kb on - strand, within GFF2984at 415.206 kb on + strand, within GFF2984at 415.206 kb on + strand, within GFF2984at 415.247 kb on - strand, within GFF2984at 415.247 kb on - strand, within GFF2984at 415.247 kb on - strand, within GFF2984at 415.247 kb on - strand, within GFF2984at 415.263 kb on + strand, within GFF2984at 415.263 kb on + strand, within GFF2984at 415.263 kb on + strand, within GFF2984at 415.263 kb on + strand, within GFF2984at 415.264 kb on - strand, within GFF2984at 415.264 kb on - strand, within GFF2984at 415.264 kb on - strand, within GFF2984at 415.264 kb on - strand, within GFF2984at 415.266 kb on + strand, within GFF2984at 415.266 kb on + strand, within GFF2984at 415.266 kb on + strand, within GFF2984at 415.266 kb on + strand, within GFF2984at 415.266 kb on + strand, within GFF2984at 415.267 kb on - strand, within GFF2984at 415.267 kb on - strand, within GFF2984at 415.267 kb on - strand, within GFF2984at 415.267 kb on - strand, within GFF2984at 415.267 kb on - strand, within GFF2984

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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412,619 + GFF2981 0.79 -0.6
412,619 + GFF2981 0.79 -0.1
412,619 + GFF2981 0.79 -0.3
412,620 - GFF2981 0.79 -0.1
412,620 - GFF2981 0.79 +0.0
413,029 + GFF2982 0.36 -0.6
413,029 + GFF2982 0.36 -0.4
413,029 + GFF2982 0.36 -0.8
413,029 + GFF2982 0.36 -1.0
413,030 - GFF2982 0.36 +1.9
413,030 - GFF2982 0.36 +0.7
413,030 - GFF2982 0.36 -1.8
413,030 - GFF2982 0.36 -1.0
413,030 - GFF2982 0.36 -0.2
413,030 - GFF2982 0.36 -0.3
413,030 - GFF2982 0.36 -1.6
413,030 - GFF2982 0.36 +2.6
413,030 - GFF2982 0.36 -0.5
413,035 + GFF2982 0.37 -0.9
413,036 - GFF2982 0.37 -1.1
413,036 - GFF2982 0.37 +0.2
413,036 - GFF2982 0.37 -3.8
413,036 - GFF2982 0.37 -1.7
413,071 + GFF2982 0.42 +0.5
413,072 - GFF2982 0.43 -0.8
413,072 - GFF2982 0.43 +0.3
413,093 + GFF2982 0.46 -1.5
413,094 - GFF2982 0.46 +2.2
413,094 - GFF2982 0.46 -0.6
413,094 - GFF2982 0.46 -1.7
413,094 - GFF2982 0.46 -2.0
413,094 - GFF2982 0.46 -1.2
413,143 + GFF2982 0.54 +0.4
413,144 - GFF2982 0.54 -1.1
413,144 - GFF2982 0.54 -0.6
413,155 + GFF2982 0.56 +1.9
413,155 + GFF2982 0.56 +0.9
413,155 + GFF2982 0.56 +1.9
413,155 + GFF2982 0.56 +0.8
413,185 + GFF2982 0.60 -0.7
413,279 - GFF2982 0.75 +1.4
413,320 + GFF2982 0.82 -1.4
413,320 + GFF2982 0.82 +2.2
413,320 + GFF2982 0.82 -1.0
413,321 - GFF2982 0.82 +0.4
413,321 - GFF2982 0.82 -3.0
413,321 - GFF2982 0.82 +0.2
413,321 - GFF2982 0.82 +1.2
413,572 + GFF2983 0.13 -0.5
413,572 + GFF2983 0.13 -0.3
413,653 + GFF2983 0.21 +1.4
413,653 + GFF2983 0.21 +3.8
413,653 + GFF2983 0.21 -0.6
413,653 + GFF2983 0.21 -1.6
413,653 + GFF2983 0.21 -0.6
413,653 + GFF2983 0.21 +1.4
413,653 + GFF2983 0.21 -1.8
413,654 - GFF2983 0.22 -0.6
413,654 - GFF2983 0.22 -0.3
413,654 - GFF2983 0.22 -2.0
413,654 - GFF2983 0.22 +2.6
413,654 - GFF2983 0.22 +0.2
413,654 - GFF2983 0.22 -0.4
413,654 - GFF2983 0.22 -1.3
413,654 - GFF2983 0.22 -0.1
413,654 - GFF2983 0.22 +1.6
413,701 + GFF2983 0.27 -1.0
413,702 - GFF2983 0.27 +0.2
413,716 + GFF2983 0.28 -1.7
414,459 + +2.5
414,473 + -1.1
414,473 + -1.6
414,473 + +0.2
414,474 - -0.3
414,476 + -0.8
414,476 + +2.9
414,476 + -0.5
414,477 - -0.9
414,477 - +0.6
414,654 + GFF2984 0.15 -3.2
414,654 + GFF2984 0.15 -1.3
414,655 - GFF2984 0.15 -0.8
414,655 - GFF2984 0.15 -1.3
414,655 - GFF2984 0.15 -1.7
414,738 + GFF2984 0.23 -0.4
414,739 - GFF2984 0.23 -1.3
414,739 - GFF2984 0.23 +1.2
414,756 + GFF2984 0.24 +0.8
414,756 + GFF2984 0.24 -1.6
414,757 - GFF2984 0.24 -1.8
414,757 - GFF2984 0.24 +0.7
414,789 + GFF2984 0.27 -0.4
414,789 + GFF2984 0.27 -3.3
415,062 + GFF2984 0.52 -0.6
415,182 + GFF2984 0.63 -0.9
415,182 + GFF2984 0.63 +0.8
415,183 - GFF2984 0.63 +1.5
415,183 - GFF2984 0.63 -0.1
415,183 - GFF2984 0.63 +0.0
415,206 + GFF2984 0.65 +0.7
415,206 + GFF2984 0.65 -0.6
415,247 - GFF2984 0.69 +1.5
415,247 - GFF2984 0.69 -1.0
415,247 - GFF2984 0.69 -2.0
415,247 - GFF2984 0.69 -1.1
415,263 + GFF2984 0.70 -0.1
415,263 + GFF2984 0.70 +1.4
415,263 + GFF2984 0.70 -2.3
415,263 + GFF2984 0.70 -1.5
415,264 - GFF2984 0.71 +3.1
415,264 - GFF2984 0.71 -0.8
415,264 - GFF2984 0.71 -1.1
415,264 - GFF2984 0.71 -0.7
415,266 + GFF2984 0.71 +0.3
415,266 + GFF2984 0.71 -1.7
415,266 + GFF2984 0.71 +0.3
415,266 + GFF2984 0.71 -1.0
415,266 + GFF2984 0.71 +0.6
415,267 - GFF2984 0.71 -1.9
415,267 - GFF2984 0.71 -0.8
415,267 - GFF2984 0.71 -0.2
415,267 - GFF2984 0.71 -0.2
415,267 - GFF2984 0.71 +0.1

Or see this region's nucleotide sequence