Strain Fitness in Variovorax sp. SCN45 around GFF2787

Experiment: Community=Locust bean gum; Passage=4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2786 and GFF2787 are separated by 14 nucleotidesGFF2787 and GFF2788 are separated by 9 nucleotidesGFF2788 and GFF2789 are separated by 92 nucleotides GFF2786 - Sulfate transporter family protein, at 215,984 to 217,711 GFF2786 GFF2787 - Transcriptional regulator PA1859, LysR family, at 217,726 to 218,610 GFF2787 GFF2788 - FIG003461: hypothetical protein, at 218,620 to 219,201 GFF2788 GFF2789 - Peptidyl-tRNA hydrolase ArfB (EC 3.1.1.29), at 219,294 to 219,701 GFF2789 Position (kb) 217 218 219Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 216.953 kb on + strand, within GFF2786at 216.953 kb on + strand, within GFF2786at 216.953 kb on + strand, within GFF2786at 216.953 kb on + strand, within GFF2786at 216.953 kb on + strand, within GFF2786at 216.954 kb on - strand, within GFF2786at 216.954 kb on - strand, within GFF2786at 216.954 kb on - strand, within GFF2786at 217.037 kb on + strand, within GFF2786at 217.037 kb on + strand, within GFF2786at 217.037 kb on + strand, within GFF2786at 217.037 kb on + strand, within GFF2786at 217.037 kb on + strand, within GFF2786at 217.038 kb on - strand, within GFF2786at 217.038 kb on - strand, within GFF2786at 217.038 kb on - strand, within GFF2786at 217.038 kb on - strand, within GFF2786at 217.196 kb on + strand, within GFF2786at 217.196 kb on + strand, within GFF2786at 217.196 kb on + strand, within GFF2786at 217.196 kb on + strand, within GFF2786at 217.196 kb on + strand, within GFF2786at 217.196 kb on + strand, within GFF2786at 217.196 kb on + strand, within GFF2786at 217.197 kb on - strand, within GFF2786at 217.197 kb on - strand, within GFF2786at 217.238 kb on + strand, within GFF2786at 217.238 kb on + strand, within GFF2786at 217.238 kb on + strand, within GFF2786at 217.238 kb on + strand, within GFF2786at 217.238 kb on + strand, within GFF2786at 217.238 kb on + strand, within GFF2786at 217.238 kb on + strand, within GFF2786at 217.238 kb on + strand, within GFF2786at 217.239 kb on - strand, within GFF2786at 217.239 kb on - strand, within GFF2786at 217.239 kb on - strand, within GFF2786at 217.239 kb on - strand, within GFF2786at 217.239 kb on - strand, within GFF2786at 217.239 kb on - strand, within GFF2786at 217.239 kb on - strand, within GFF2786at 217.239 kb on - strand, within GFF2786at 217.239 kb on - strand, within GFF2786at 217.239 kb on - strand, within GFF2786at 217.239 kb on - strand, within GFF2786at 217.244 kb on + strand, within GFF2786at 217.244 kb on + strand, within GFF2786at 217.244 kb on + strand, within GFF2786at 217.244 kb on + strand, within GFF2786at 217.244 kb on + strand, within GFF2786at 217.244 kb on + strand, within GFF2786at 217.245 kb on - strand, within GFF2786at 217.245 kb on - strand, within GFF2786at 217.245 kb on - strand, within GFF2786at 217.245 kb on - strand, within GFF2786at 217.346 kb on + strand, within GFF2786at 217.346 kb on + strand, within GFF2786at 217.346 kb on + strand, within GFF2786at 217.346 kb on + strand, within GFF2786at 217.347 kb on - strand, within GFF2786at 217.347 kb on - strand, within GFF2786at 217.347 kb on - strand, within GFF2786at 217.625 kb on + strandat 218.080 kb on + strand, within GFF2787at 218.081 kb on - strand, within GFF2787at 218.516 kb on + strand, within GFF2787at 218.516 kb on + strand, within GFF2787at 218.516 kb on + strand, within GFF2787at 218.516 kb on + strand, within GFF2787at 218.517 kb on - strand, within GFF2787at 218.517 kb on - strand, within GFF2787at 218.517 kb on - strand, within GFF2787at 218.517 kb on - strand, within GFF2787at 218.517 kb on - strand, within GFF2787at 218.517 kb on - strand, within GFF2787at 218.539 kb on + strandat 218.539 kb on + strandat 218.540 kb on - strandat 218.540 kb on - strandat 218.540 kb on - strandat 218.540 kb on - strandat 218.540 kb on - strandat 218.540 kb on - strandat 218.540 kb on - strandat 218.542 kb on + strandat 218.542 kb on + strandat 218.542 kb on + strandat 218.543 kb on - strandat 218.543 kb on - strandat 218.702 kb on + strand, within GFF2788at 218.702 kb on + strand, within GFF2788at 218.702 kb on + strand, within GFF2788at 218.703 kb on - strand, within GFF2788at 218.732 kb on + strand, within GFF2788at 218.732 kb on + strand, within GFF2788at 218.732 kb on + strand, within GFF2788at 218.732 kb on + strand, within GFF2788at 218.732 kb on + strand, within GFF2788at 218.732 kb on + strand, within GFF2788at 218.732 kb on + strand, within GFF2788at 218.732 kb on + strand, within GFF2788at 218.732 kb on + strand, within GFF2788at 218.732 kb on + strand, within GFF2788at 218.732 kb on + strand, within GFF2788at 218.733 kb on - strand, within GFF2788at 218.733 kb on - strand, within GFF2788at 218.733 kb on - strand, within GFF2788at 218.733 kb on - strand, within GFF2788at 218.733 kb on - strand, within GFF2788at 218.733 kb on - strand, within GFF2788at 218.733 kb on - strand, within GFF2788at 218.733 kb on - strand, within GFF2788at 218.733 kb on - strand, within GFF2788at 218.733 kb on - strand, within GFF2788at 218.733 kb on - strand, within GFF2788at 218.733 kb on - strand, within GFF2788at 218.733 kb on - strand, within GFF2788at 218.733 kb on - strand, within GFF2788at 218.733 kb on - strand, within GFF2788at 218.733 kb on - strand, within GFF2788at 218.734 kb on + strand, within GFF2788at 218.734 kb on + strand, within GFF2788at 218.734 kb on + strand, within GFF2788at 218.734 kb on + strand, within GFF2788at 218.735 kb on - strand, within GFF2788at 218.735 kb on - strand, within GFF2788at 218.735 kb on - strand, within GFF2788at 218.834 kb on + strand, within GFF2788at 218.834 kb on + strand, within GFF2788at 218.834 kb on + strand, within GFF2788at 218.834 kb on + strand, within GFF2788at 218.834 kb on + strand, within GFF2788at 218.835 kb on - strand, within GFF2788at 218.835 kb on - strand, within GFF2788at 218.835 kb on - strand, within GFF2788at 218.835 kb on - strand, within GFF2788at 219.373 kb on + strand, within GFF2789at 219.374 kb on - strand, within GFF2789at 219.374 kb on - strand, within GFF2789at 219.586 kb on + strand, within GFF2789at 219.597 kb on + strand, within GFF2789at 219.597 kb on + strand, within GFF2789at 219.597 kb on + strand, within GFF2789at 219.597 kb on + strand, within GFF2789at 219.598 kb on - strand, within GFF2789at 219.598 kb on - strand, within GFF2789at 219.598 kb on - strand, within GFF2789

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
remove
216,953 + GFF2786 0.56 -2.4
216,953 + GFF2786 0.56 +1.2
216,953 + GFF2786 0.56 -0.9
216,953 + GFF2786 0.56 -0.9
216,953 + GFF2786 0.56 +2.0
216,954 - GFF2786 0.56 +1.8
216,954 - GFF2786 0.56 +0.3
216,954 - GFF2786 0.56 -1.7
217,037 + GFF2786 0.61 +0.4
217,037 + GFF2786 0.61 +1.0
217,037 + GFF2786 0.61 -0.0
217,037 + GFF2786 0.61 -0.3
217,037 + GFF2786 0.61 -0.5
217,038 - GFF2786 0.61 +1.0
217,038 - GFF2786 0.61 -0.9
217,038 - GFF2786 0.61 -2.0
217,038 - GFF2786 0.61 -1.1
217,196 + GFF2786 0.70 +1.5
217,196 + GFF2786 0.70 -0.9
217,196 + GFF2786 0.70 +0.1
217,196 + GFF2786 0.70 -2.8
217,196 + GFF2786 0.70 +2.6
217,196 + GFF2786 0.70 -0.2
217,196 + GFF2786 0.70 +0.3
217,197 - GFF2786 0.70 -1.8
217,197 - GFF2786 0.70 -1.8
217,238 + GFF2786 0.73 -3.1
217,238 + GFF2786 0.73 -1.9
217,238 + GFF2786 0.73 -0.9
217,238 + GFF2786 0.73 +0.1
217,238 + GFF2786 0.73 +1.8
217,238 + GFF2786 0.73 +1.1
217,238 + GFF2786 0.73 -2.3
217,238 + GFF2786 0.73 -2.4
217,239 - GFF2786 0.73 +0.5
217,239 - GFF2786 0.73 +0.1
217,239 - GFF2786 0.73 +0.6
217,239 - GFF2786 0.73 -1.2
217,239 - GFF2786 0.73 +2.1
217,239 - GFF2786 0.73 -1.4
217,239 - GFF2786 0.73 +0.0
217,239 - GFF2786 0.73 +1.2
217,239 - GFF2786 0.73 -0.4
217,239 - GFF2786 0.73 +2.5
217,239 - GFF2786 0.73 -1.3
217,244 + GFF2786 0.73 +0.1
217,244 + GFF2786 0.73 +1.7
217,244 + GFF2786 0.73 -1.4
217,244 + GFF2786 0.73 -2.3
217,244 + GFF2786 0.73 -0.2
217,244 + GFF2786 0.73 -0.2
217,245 - GFF2786 0.73 +0.6
217,245 - GFF2786 0.73 -0.2
217,245 - GFF2786 0.73 -1.9
217,245 - GFF2786 0.73 -0.1
217,346 + GFF2786 0.79 +0.7
217,346 + GFF2786 0.79 +0.8
217,346 + GFF2786 0.79 +0.6
217,346 + GFF2786 0.79 +1.2
217,347 - GFF2786 0.79 +0.8
217,347 - GFF2786 0.79 +0.4
217,347 - GFF2786 0.79 +0.1
217,625 + +0.6
218,080 + GFF2787 0.40 -1.5
218,081 - GFF2787 0.40 +1.8
218,516 + GFF2787 0.89 -0.9
218,516 + GFF2787 0.89 +0.6
218,516 + GFF2787 0.89 -0.2
218,516 + GFF2787 0.89 -1.6
218,517 - GFF2787 0.89 +1.5
218,517 - GFF2787 0.89 -0.7
218,517 - GFF2787 0.89 +0.1
218,517 - GFF2787 0.89 -1.6
218,517 - GFF2787 0.89 -1.6
218,517 - GFF2787 0.89 +1.8
218,539 + -0.3
218,539 + -1.6
218,540 - -1.4
218,540 - -0.7
218,540 - +1.4
218,540 - -1.3
218,540 - -1.3
218,540 - +1.7
218,540 - -0.2
218,542 + -1.9
218,542 + -0.4
218,542 + -2.2
218,543 - -1.8
218,543 - +3.6
218,702 + GFF2788 0.14 -0.2
218,702 + GFF2788 0.14 -1.9
218,702 + GFF2788 0.14 -2.2
218,703 - GFF2788 0.14 -2.2
218,732 + GFF2788 0.19 +1.9
218,732 + GFF2788 0.19 -1.0
218,732 + GFF2788 0.19 +0.1
218,732 + GFF2788 0.19 +1.1
218,732 + GFF2788 0.19 -1.3
218,732 + GFF2788 0.19 -0.7
218,732 + GFF2788 0.19 -1.0
218,732 + GFF2788 0.19 -1.2
218,732 + GFF2788 0.19 -1.4
218,732 + GFF2788 0.19 +0.8
218,732 + GFF2788 0.19 -0.9
218,733 - GFF2788 0.19 +0.1
218,733 - GFF2788 0.19 +0.8
218,733 - GFF2788 0.19 -0.3
218,733 - GFF2788 0.19 -0.6
218,733 - GFF2788 0.19 -1.0
218,733 - GFF2788 0.19 -1.3
218,733 - GFF2788 0.19 -1.9
218,733 - GFF2788 0.19 +0.6
218,733 - GFF2788 0.19 -0.4
218,733 - GFF2788 0.19 -0.3
218,733 - GFF2788 0.19 -1.4
218,733 - GFF2788 0.19 -2.6
218,733 - GFF2788 0.19 -0.9
218,733 - GFF2788 0.19 -1.7
218,733 - GFF2788 0.19 +1.0
218,733 - GFF2788 0.19 +2.1
218,734 + GFF2788 0.20 +0.5
218,734 + GFF2788 0.20 +0.1
218,734 + GFF2788 0.20 +1.5
218,734 + GFF2788 0.20 +0.6
218,735 - GFF2788 0.20 +0.1
218,735 - GFF2788 0.20 -1.8
218,735 - GFF2788 0.20 -3.3
218,834 + GFF2788 0.37 +2.6
218,834 + GFF2788 0.37 -2.9
218,834 + GFF2788 0.37 -1.2
218,834 + GFF2788 0.37 -2.3
218,834 + GFF2788 0.37 +0.5
218,835 - GFF2788 0.37 -0.2
218,835 - GFF2788 0.37 +0.0
218,835 - GFF2788 0.37 -1.8
218,835 - GFF2788 0.37 +0.6
219,373 + GFF2789 0.19 -0.4
219,374 - GFF2789 0.20 -1.6
219,374 - GFF2789 0.20 -0.1
219,586 + GFF2789 0.72 -1.4
219,597 + GFF2789 0.74 -2.4
219,597 + GFF2789 0.74 +0.6
219,597 + GFF2789 0.74 +1.1
219,597 + GFF2789 0.74 -4.1
219,598 - GFF2789 0.75 -1.2
219,598 - GFF2789 0.75 -0.2
219,598 - GFF2789 0.75 +0.1

Or see this region's nucleotide sequence