Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF269 and GFF270 are separated by 18 nucleotides GFF270 and GFF271 are separated by 70 nucleotides
GFF269 - 2-methylaconitate isomerase, at 303,319 to 304,509
GFF269
GFF270 - 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming) (EC 4.2.1.117), at 304,528 to 307,146
GFF270
GFF271 - 2-methylcitrate synthase (EC 2.3.3.5), at 307,217 to 308,380
GFF271
Position (kb) 304
305
306
307
308 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 303.648 kb on - strand, within GFF269 at 303.819 kb on - strand, within GFF269 at 304.253 kb on + strand, within GFF269 at 304.253 kb on + strand, within GFF269 at 304.253 kb on + strand, within GFF269 at 304.253 kb on + strand, within GFF269 at 304.254 kb on - strand, within GFF269 at 304.254 kb on - strand, within GFF269 at 304.254 kb on - strand, within GFF269 at 304.254 kb on - strand, within GFF269 at 304.254 kb on - strand, within GFF269 at 304.254 kb on - strand, within GFF269 at 304.254 kb on - strand, within GFF269 at 304.254 kb on - strand, within GFF269 at 304.349 kb on + strand, within GFF269 at 304.472 kb on + strand at 304.472 kb on + strand at 304.472 kb on + strand at 304.472 kb on + strand at 304.472 kb on + strand at 304.472 kb on + strand at 304.472 kb on + strand at 304.472 kb on + strand at 304.472 kb on + strand at 304.472 kb on + strand at 304.472 kb on + strand at 304.472 kb on + strand at 304.473 kb on - strand at 304.473 kb on - strand at 304.473 kb on - strand at 304.473 kb on - strand at 304.473 kb on - strand at 304.473 kb on - strand at 304.473 kb on - strand at 304.616 kb on + strand at 304.616 kb on + strand at 304.616 kb on + strand at 304.616 kb on - strand at 304.617 kb on - strand at 304.617 kb on - strand at 304.617 kb on - strand at 304.739 kb on + strand at 304.739 kb on + strand at 304.739 kb on + strand at 304.740 kb on - strand at 304.740 kb on - strand at 304.740 kb on - strand at 304.740 kb on - strand at 304.922 kb on + strand, within GFF270 at 304.923 kb on - strand, within GFF270 at 304.967 kb on + strand, within GFF270 at 304.967 kb on + strand, within GFF270 at 304.967 kb on + strand, within GFF270 at 304.967 kb on + strand, within GFF270 at 304.967 kb on + strand, within GFF270 at 304.967 kb on + strand, within GFF270 at 304.967 kb on + strand, within GFF270 at 304.967 kb on + strand, within GFF270 at 304.967 kb on + strand, within GFF270 at 304.967 kb on + strand, within GFF270 at 304.967 kb on + strand, within GFF270 at 304.967 kb on + strand, within GFF270 at 304.967 kb on + strand, within GFF270 at 304.967 kb on + strand, within GFF270 at 304.967 kb on + strand, within GFF270 at 304.967 kb on + strand, within GFF270 at 304.967 kb on + strand, within GFF270 at 304.968 kb on - strand, within GFF270 at 304.968 kb on - strand, within GFF270 at 304.968 kb on - strand, within GFF270 at 304.968 kb on - strand, within GFF270 at 304.968 kb on - strand, within GFF270 at 304.968 kb on - strand, within GFF270 at 304.968 kb on - strand, within GFF270 at 304.968 kb on - strand, within GFF270 at 304.968 kb on - strand, within GFF270 at 304.968 kb on - strand, within GFF270 at 304.968 kb on - strand, within GFF270 at 304.968 kb on - strand, within GFF270 at 304.968 kb on - strand, within GFF270 at 304.968 kb on - strand, within GFF270 at 304.968 kb on - strand, within GFF270 at 305.135 kb on + strand, within GFF270 at 305.136 kb on - strand, within GFF270 at 305.171 kb on + strand, within GFF270 at 305.171 kb on + strand, within GFF270 at 305.171 kb on + strand, within GFF270 at 305.171 kb on + strand, within GFF270 at 305.171 kb on + strand, within GFF270 at 305.171 kb on + strand, within GFF270 at 305.171 kb on + strand, within GFF270 at 305.172 kb on - strand, within GFF270 at 305.172 kb on - strand, within GFF270 at 305.172 kb on - strand, within GFF270 at 305.172 kb on - strand, within GFF270 at 305.172 kb on - strand, within GFF270 at 305.178 kb on - strand, within GFF270 at 305.178 kb on - strand, within GFF270 at 305.178 kb on - strand, within GFF270 at 305.178 kb on - strand, within GFF270 at 305.327 kb on + strand, within GFF270 at 305.327 kb on + strand, within GFF270 at 305.327 kb on + strand, within GFF270 at 305.327 kb on + strand, within GFF270 at 305.327 kb on + strand, within GFF270 at 305.327 kb on + strand, within GFF270 at 305.327 kb on + strand, within GFF270 at 305.328 kb on - strand, within GFF270 at 305.328 kb on - strand, within GFF270 at 305.328 kb on - strand, within GFF270 at 305.328 kb on - strand, within GFF270 at 305.328 kb on - strand, within GFF270 at 305.328 kb on - strand, within GFF270 at 305.351 kb on + strand, within GFF270 at 305.351 kb on + strand, within GFF270 at 305.405 kb on + strand, within GFF270 at 305.405 kb on + strand, within GFF270 at 305.405 kb on + strand, within GFF270 at 305.405 kb on + strand, within GFF270 at 305.406 kb on - strand, within GFF270 at 305.406 kb on - strand, within GFF270 at 305.406 kb on - strand, within GFF270 at 305.406 kb on - strand, within GFF270 at 305.406 kb on - strand, within GFF270 at 305.561 kb on + strand, within GFF270 at 305.561 kb on + strand, within GFF270 at 305.561 kb on + strand, within GFF270 at 305.562 kb on - strand, within GFF270 at 305.562 kb on - strand, within GFF270 at 305.562 kb on - strand, within GFF270 at 305.562 kb on - strand, within GFF270 at 305.562 kb on - strand, within GFF270 at 305.562 kb on - strand, within GFF270 at 305.562 kb on - strand, within GFF270 at 305.607 kb on - strand, within GFF270 at 305.660 kb on + strand, within GFF270 at 305.660 kb on + strand, within GFF270 at 305.660 kb on + strand, within GFF270 at 305.660 kb on + strand, within GFF270 at 305.661 kb on - strand, within GFF270 at 305.661 kb on - strand, within GFF270 at 305.661 kb on - strand, within GFF270 at 305.661 kb on - strand, within GFF270 at 305.661 kb on - strand, within GFF270 at 305.738 kb on + strand, within GFF270 at 305.738 kb on - strand, within GFF270 at 305.739 kb on - strand, within GFF270 at 305.739 kb on - strand, within GFF270 at 305.739 kb on - strand, within GFF270 at 305.739 kb on - strand, within GFF270 at 305.798 kb on + strand, within GFF270 at 305.798 kb on + strand, within GFF270 at 305.798 kb on + strand, within GFF270 at 305.798 kb on + strand, within GFF270 at 305.799 kb on - strand, within GFF270 at 305.799 kb on - strand, within GFF270 at 305.799 kb on - strand, within GFF270 at 305.799 kb on - strand, within GFF270 at 305.799 kb on - strand, within GFF270 at 306.107 kb on + strand, within GFF270 at 306.107 kb on + strand, within GFF270 at 306.108 kb on - strand, within GFF270 at 306.108 kb on - strand, within GFF270 at 306.155 kb on + strand, within GFF270 at 306.156 kb on - strand, within GFF270 at 306.156 kb on - strand, within GFF270 at 306.206 kb on + strand, within GFF270 at 306.206 kb on + strand, within GFF270 at 306.207 kb on - strand, within GFF270 at 306.207 kb on - strand, within GFF270 at 306.332 kb on + strand, within GFF270 at 306.332 kb on + strand, within GFF270 at 306.332 kb on + strand, within GFF270 at 306.332 kb on + strand, within GFF270 at 306.333 kb on - strand, within GFF270 at 307.040 kb on + strand at 307.040 kb on + strand at 307.041 kb on - strand at 307.041 kb on - strand at 307.041 kb on - strand at 307.041 kb on - strand at 307.041 kb on - strand at 307.041 kb on - strand at 307.041 kb on - strand at 307.042 kb on - strand at 307.100 kb on + strand at 307.100 kb on + strand at 307.100 kb on + strand at 307.100 kb on + strand at 307.101 kb on - strand at 307.101 kb on - strand at 307.101 kb on - strand at 307.101 kb on - strand at 307.140 kb on + strand at 307.141 kb on - strand at 307.218 kb on + strand at 307.266 kb on + strand at 307.266 kb on + strand at 307.266 kb on + strand at 307.266 kb on + strand at 307.266 kb on + strand at 307.267 kb on - strand at 307.267 kb on - strand at 307.267 kb on - strand at 307.267 kb on - strand at 307.267 kb on - strand at 307.267 kb on - strand at 307.267 kb on - strand at 307.316 kb on - strand at 307.392 kb on + strand, within GFF271 at 307.392 kb on + strand, within GFF271 at 307.392 kb on + strand, within GFF271 at 307.392 kb on + strand, within GFF271 at 307.392 kb on + strand, within GFF271 at 307.393 kb on - strand, within GFF271 at 307.393 kb on - strand, within GFF271 at 307.393 kb on - strand, within GFF271 at 307.482 kb on + strand, within GFF271 at 307.557 kb on + strand, within GFF271 at 307.557 kb on + strand, within GFF271 at 307.558 kb on - strand, within GFF271 at 307.558 kb on - strand, within GFF271 at 307.558 kb on - strand, within GFF271 at 307.558 kb on - strand, within GFF271 at 307.558 kb on - strand, within GFF271 at 307.642 kb on - strand, within GFF271 at 307.728 kb on + strand, within GFF271 at 307.728 kb on + strand, within GFF271 at 307.728 kb on + strand, within GFF271 at 307.728 kb on + strand, within GFF271 at 307.728 kb on + strand, within GFF271 at 307.728 kb on + strand, within GFF271 at 307.728 kb on + strand, within GFF271 at 307.728 kb on + strand, within GFF271 at 307.728 kb on + strand, within GFF271 at 307.728 kb on + strand, within GFF271 at 307.729 kb on - strand, within GFF271 at 307.729 kb on - strand, within GFF271 at 307.729 kb on - strand, within GFF271 at 307.729 kb on - strand, within GFF271 at 307.729 kb on - strand, within GFF271 at 307.729 kb on - strand, within GFF271 at 307.729 kb on - strand, within GFF271 at 307.729 kb on - strand, within GFF271 at 307.729 kb on - strand, within GFF271 at 307.729 kb on - strand, within GFF271 at 307.729 kb on - strand, within GFF271 at 307.729 kb on - strand, within GFF271 at 307.729 kb on - strand, within GFF271 at 307.729 kb on - strand, within GFF271 at 307.797 kb on + strand, within GFF271 at 307.798 kb on - strand, within GFF271 at 307.936 kb on - strand, within GFF271 at 307.936 kb on - strand, within GFF271 at 307.941 kb on + strand, within GFF271 at 307.941 kb on + strand, within GFF271 at 307.941 kb on + strand, within GFF271 at 307.941 kb on + strand, within GFF271 at 307.941 kb on + strand, within GFF271 at 307.942 kb on - strand, within GFF271 at 307.942 kb on - strand, within GFF271 at 307.942 kb on - strand, within GFF271 at 307.942 kb on - strand, within GFF271 at 307.942 kb on - strand, within GFF271 at 307.942 kb on - strand, within GFF271 at 307.942 kb on - strand, within GFF271
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 303,648 - GFF269 0.28 -3.3 303,819 - GFF269 0.42 -0.7 304,253 + GFF269 0.78 -1.5 304,253 + GFF269 0.78 -1.9 304,253 + GFF269 0.78 -4.0 304,253 + GFF269 0.78 -3.4 304,254 - GFF269 0.79 +0.3 304,254 - GFF269 0.79 -5.0 304,254 - GFF269 0.79 -2.6 304,254 - GFF269 0.79 -1.0 304,254 - GFF269 0.79 -3.2 304,254 - GFF269 0.79 -2.7 304,254 - GFF269 0.79 -1.7 304,254 - GFF269 0.79 -2.8 304,349 + GFF269 0.86 -1.2 304,472 + -2.8 304,472 + -2.4 304,472 + -4.2 304,472 + -3.4 304,472 + -2.5 304,472 + -4.4 304,472 + +0.4 304,472 + -1.3 304,472 + -1.3 304,472 + -3.7 304,472 + -2.0 304,472 + -1.2 304,473 - -3.3 304,473 - -3.4 304,473 - -4.8 304,473 - -2.6 304,473 - -1.3 304,473 - -5.1 304,473 - -1.9 304,616 + -3.7 304,616 + -2.1 304,616 + -1.0 304,616 - -2.5 304,617 - -3.0 304,617 - -2.2 304,617 - +2.6 304,739 + -2.7 304,739 + -2.8 304,739 + -1.2 304,740 - -1.0 304,740 - +0.8 304,740 - -4.6 304,740 - -4.2 304,922 + GFF270 0.15 -2.2 304,923 - GFF270 0.15 -1.2 304,967 + GFF270 0.17 -3.8 304,967 + GFF270 0.17 -2.7 304,967 + GFF270 0.17 -1.0 304,967 + GFF270 0.17 -2.8 304,967 + GFF270 0.17 -1.5 304,967 + GFF270 0.17 -1.2 304,967 + GFF270 0.17 -2.9 304,967 + GFF270 0.17 -1.9 304,967 + GFF270 0.17 -2.0 304,967 + GFF270 0.17 -2.0 304,967 + GFF270 0.17 -4.2 304,967 + GFF270 0.17 -1.2 304,967 + GFF270 0.17 +0.3 304,967 + GFF270 0.17 -1.5 304,967 + GFF270 0.17 -1.3 304,967 + GFF270 0.17 -3.6 304,967 + GFF270 0.17 -2.3 304,968 - GFF270 0.17 -1.3 304,968 - GFF270 0.17 -0.7 304,968 - GFF270 0.17 -3.0 304,968 - GFF270 0.17 -1.9 304,968 - GFF270 0.17 -3.7 304,968 - GFF270 0.17 -0.2 304,968 - GFF270 0.17 -1.0 304,968 - GFF270 0.17 -2.2 304,968 - GFF270 0.17 -2.6 304,968 - GFF270 0.17 -3.3 304,968 - GFF270 0.17 -3.2 304,968 - GFF270 0.17 -3.5 304,968 - GFF270 0.17 -4.3 304,968 - GFF270 0.17 -3.2 304,968 - GFF270 0.17 -4.5 305,135 + GFF270 0.23 -3.8 305,136 - GFF270 0.23 -0.7 305,171 + GFF270 0.25 -1.2 305,171 + GFF270 0.25 -1.6 305,171 + GFF270 0.25 -3.2 305,171 + GFF270 0.25 -3.2 305,171 + GFF270 0.25 -0.7 305,171 + GFF270 0.25 -2.1 305,171 + GFF270 0.25 -2.4 305,172 - GFF270 0.25 -2.5 305,172 - GFF270 0.25 -2.9 305,172 - GFF270 0.25 -4.4 305,172 - GFF270 0.25 -4.3 305,172 - GFF270 0.25 -1.9 305,178 - GFF270 0.25 -4.4 305,178 - GFF270 0.25 -2.3 305,178 - GFF270 0.25 -4.6 305,178 - GFF270 0.25 -4.2 305,327 + GFF270 0.31 -1.5 305,327 + GFF270 0.31 -2.6 305,327 + GFF270 0.31 -2.2 305,327 + GFF270 0.31 -2.2 305,327 + GFF270 0.31 -1.5 305,327 + GFF270 0.31 -3.9 305,327 + GFF270 0.31 -4.8 305,328 - GFF270 0.31 -3.3 305,328 - GFF270 0.31 -2.1 305,328 - GFF270 0.31 -1.6 305,328 - GFF270 0.31 -2.2 305,328 - GFF270 0.31 -1.2 305,328 - GFF270 0.31 -0.7 305,351 + GFF270 0.31 -4.6 305,351 + GFF270 0.31 -1.7 305,405 + GFF270 0.33 -3.1 305,405 + GFF270 0.33 -2.2 305,405 + GFF270 0.33 -0.5 305,405 + GFF270 0.33 -0.5 305,406 - GFF270 0.34 -2.8 305,406 - GFF270 0.34 -2.0 305,406 - GFF270 0.34 -2.2 305,406 - GFF270 0.34 -2.3 305,406 - GFF270 0.34 -4.4 305,561 + GFF270 0.39 -3.4 305,561 + GFF270 0.39 -2.3 305,561 + GFF270 0.39 -3.6 305,562 - GFF270 0.39 -0.2 305,562 - GFF270 0.39 -2.5 305,562 - GFF270 0.39 -1.6 305,562 - GFF270 0.39 -4.4 305,562 - GFF270 0.39 -1.2 305,562 - GFF270 0.39 -1.3 305,562 - GFF270 0.39 -0.7 305,607 - GFF270 0.41 -4.9 305,660 + GFF270 0.43 -4.3 305,660 + GFF270 0.43 -3.0 305,660 + GFF270 0.43 -3.7 305,660 + GFF270 0.43 -1.5 305,661 - GFF270 0.43 -3.8 305,661 - GFF270 0.43 -1.9 305,661 - GFF270 0.43 -2.2 305,661 - GFF270 0.43 -2.7 305,661 - GFF270 0.43 -2.0 305,738 + GFF270 0.46 -3.6 305,738 - GFF270 0.46 -1.0 305,739 - GFF270 0.46 -3.1 305,739 - GFF270 0.46 -0.2 305,739 - GFF270 0.46 -3.5 305,739 - GFF270 0.46 -2.4 305,798 + GFF270 0.48 -3.2 305,798 + GFF270 0.48 +0.3 305,798 + GFF270 0.48 -3.7 305,798 + GFF270 0.48 -0.2 305,799 - GFF270 0.49 -1.7 305,799 - GFF270 0.49 -0.2 305,799 - GFF270 0.49 -0.5 305,799 - GFF270 0.49 -1.3 305,799 - GFF270 0.49 -3.2 306,107 + GFF270 0.60 -1.2 306,107 + GFF270 0.60 -2.9 306,108 - GFF270 0.60 -2.0 306,108 - GFF270 0.60 -1.7 306,155 + GFF270 0.62 -3.7 306,156 - GFF270 0.62 -2.4 306,156 - GFF270 0.62 -1.6 306,206 + GFF270 0.64 -1.0 306,206 + GFF270 0.64 +1.4 306,207 - GFF270 0.64 -2.0 306,207 - GFF270 0.64 -2.1 306,332 + GFF270 0.69 -3.6 306,332 + GFF270 0.69 -3.6 306,332 + GFF270 0.69 -2.1 306,332 + GFF270 0.69 -2.7 306,333 - GFF270 0.69 -3.3 307,040 + -1.7 307,040 + -1.0 307,041 - -1.3 307,041 - -1.3 307,041 - -1.2 307,041 - -4.0 307,041 - -3.7 307,041 - -4.8 307,041 - -1.6 307,042 - -4.0 307,100 + -1.9 307,100 + -4.1 307,100 + -3.5 307,100 + -2.3 307,101 - -2.7 307,101 - -2.2 307,101 - -2.6 307,101 - -2.6 307,140 + -2.3 307,141 - -4.2 307,218 + -1.3 307,266 + -2.6 307,266 + -0.5 307,266 + -1.3 307,266 + -1.7 307,266 + -1.7 307,267 - -3.0 307,267 - -4.2 307,267 - -1.9 307,267 - -2.2 307,267 - -1.5 307,267 - -1.5 307,267 - -2.1 307,316 - -1.6 307,392 + GFF271 0.15 -2.3 307,392 + GFF271 0.15 -3.2 307,392 + GFF271 0.15 -2.7 307,392 + GFF271 0.15 +0.1 307,392 + GFF271 0.15 -2.8 307,393 - GFF271 0.15 -1.0 307,393 - GFF271 0.15 +1.8 307,393 - GFF271 0.15 -1.3 307,482 + GFF271 0.23 -1.7 307,557 + GFF271 0.29 -2.3 307,557 + GFF271 0.29 -1.5 307,558 - GFF271 0.29 +0.8 307,558 - GFF271 0.29 -1.3 307,558 - GFF271 0.29 -1.2 307,558 - GFF271 0.29 -3.2 307,558 - GFF271 0.29 -2.2 307,642 - GFF271 0.37 -2.5 307,728 + GFF271 0.44 -2.9 307,728 + GFF271 0.44 -0.5 307,728 + GFF271 0.44 +0.3 307,728 + GFF271 0.44 -1.0 307,728 + GFF271 0.44 -2.9 307,728 + GFF271 0.44 -2.5 307,728 + GFF271 0.44 -2.1 307,728 + GFF271 0.44 -1.9 307,728 + GFF271 0.44 -1.0 307,728 + GFF271 0.44 +0.8 307,729 - GFF271 0.44 -2.8 307,729 - GFF271 0.44 -1.6 307,729 - GFF271 0.44 -1.9 307,729 - GFF271 0.44 -2.7 307,729 - GFF271 0.44 -2.0 307,729 - GFF271 0.44 -1.6 307,729 - GFF271 0.44 -0.5 307,729 - GFF271 0.44 -2.9 307,729 - GFF271 0.44 -2.2 307,729 - GFF271 0.44 -1.9 307,729 - GFF271 0.44 -1.0 307,729 - GFF271 0.44 +0.3 307,729 - GFF271 0.44 -0.7 307,729 - GFF271 0.44 -1.6 307,797 + GFF271 0.50 -1.2 307,798 - GFF271 0.50 -2.3 307,936 - GFF271 0.62 -1.5 307,936 - GFF271 0.62 -3.4 307,941 + GFF271 0.62 -2.4 307,941 + GFF271 0.62 -2.1 307,941 + GFF271 0.62 -3.5 307,941 + GFF271 0.62 -0.2 307,941 + GFF271 0.62 -1.2 307,942 - GFF271 0.62 -2.5 307,942 - GFF271 0.62 -1.5 307,942 - GFF271 0.62 -3.0 307,942 - GFF271 0.62 -1.6 307,942 - GFF271 0.62 -1.0 307,942 - GFF271 0.62 -2.5 307,942 - GFF271 0.62 -3.5
Or see this region's nucleotide sequence