Strain Fitness in Variovorax sp. SCN45 around GFF2685

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
107,849	+				-1.1
107,850	-				-2.0
107,850	-				-1.0
107,933	+				+0.3
107,933	+				+1.5
107,934	-				+0.2
108,245	+		GFF2684	0.41	-1.6
108,245	+		GFF2684	0.41	-2.0
108,245	+		GFF2684	0.41	+1.1
108,245	+		GFF2684	0.41	+1.2
108,246	-		GFF2684	0.41	-0.1
108,246	-		GFF2684	0.41	-2.0
108,246	-		GFF2684	0.41	+0.3
108,246	-		GFF2684	0.41	+2.1
108,252	+		GFF2684	0.42	-1.0
108,252	+		GFF2684	0.42	-2.9
108,252	+		GFF2684	0.42	-0.9
108,252	+		GFF2684	0.42	+2.6
108,253	-		GFF2684	0.42	+0.3
108,253	-		GFF2684	0.42	-0.8
108,253	-		GFF2684	0.42	-2.0
108,253	-		GFF2684	0.42	-1.5
108,554	+		GFF2684	0.73	-2.3
108,776	+				-0.7
108,776	+				+0.7
108,776	+				-1.5
108,776	+				-1.8
108,776	+				+2.7
108,776	+				+3.1
108,776	+				-0.2
108,777	-				+1.8
108,777	-				-0.9
108,777	-				+0.9
108,777	-				+1.1
108,777	-				+0.1
108,777	-				+2.5
108,777	-				-0.1
108,777	-				-2.6
108,777	-				-0.1
108,777	-				+0.8
108,777	-				+0.1
108,777	-				+0.2
108,818	+				+2.6
108,841	+				+0.7
108,842	-				-3.7
109,263	-		GFF2685	0.17	+1.7
109,445	+		GFF2685	0.25	+0.4
109,446	-		GFF2685	0.25	-0.5
109,446	-		GFF2685	0.25	+1.7
109,549	+		GFF2685	0.29	-0.3
109,567	+		GFF2685	0.29	+0.2
109,568	-		GFF2685	0.29	+0.1
109,568	-		GFF2685	0.29	+0.7
110,300	-		GFF2685	0.59	+1.3
110,300	-		GFF2685	0.59	-0.9
110,300	-		GFF2685	0.59	-1.3
110,666	-		GFF2685	0.74	+1.7
110,858	-		GFF2685	0.82	-0.5
111,314	+				-2.3
111,314	+				-3.2
111,314	+				-1.3
111,389	+				+1.7
111,389	+				-1.0
111,389	+				-2.1
111,389	+				+0.8
111,389	+				-2.2
111,389	+				-4.5
111,390	-				-3.3
111,390	-				+2.9
111,390	-				-1.1
111,390	-				-1.3
111,390	-				-1.5
111,390	-				-1.5
111,390	-				-0.6
111,390	-				-2.7
111,390	-				+0.4
111,414	+				-0.5
111,432	-				-1.2
111,432	-				-1.2
111,432	-				-1.3
111,432	-				-1.7
111,485	+				+0.9
111,485	+				-0.4
111,485	+				-1.3
111,485	+				+0.0
111,485	+				-1.0
111,486	-				+0.4
111,486	-				-3.2
111,486	-				-1.3
111,491	+				-1.2
111,491	+				-2.3
111,491	+				+0.2
111,491	+				+2.3
111,491	+				-0.6
111,491	+				-3.3
111,492	-				-2.0
111,492	-				-0.5
111,492	-				+0.5
111,492	-				-0.5
111,569	+				-0.2
111,632	+				-0.8
111,632	+				+0.5
111,632	+				+0.5
111,632	+				-0.6
111,632	+				+1.1
111,632	+				-2.6
111,633	-				-2.5
111,633	-				+0.7
111,633	-				+0.1
111,710	+				-3.0
111,710	+				-1.0
111,711	-				-0.5
111,765	-				+0.4
111,797	+				+0.1
111,836	+		GFF2686	0.11	+0.5
111,837	-		GFF2686	0.11	-1.3
111,920	+		GFF2686	0.13	-2.2
111,920	+		GFF2686	0.13	+0.3
111,921	-		GFF2686	0.13	-2.1
111,921	-		GFF2686	0.13	-0.5
111,921	-		GFF2686	0.13	-2.2
112,058	+		GFF2686	0.17	+0.7
112,058	+		GFF2686	0.17	+0.1