Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2667 and GFF2668 are separated by 9 nucleotides GFF2668 and GFF2669 overlap by 4 nucleotides GFF2669 and GFF2670 overlap by 4 nucleotides GFF2670 and GFF2671 overlap by 4 nucleotides
GFF2667 - COG4339 metal-dependent phosphohydrolase, HD superfamily, at 90,674 to 91,294
GFF2667
GFF2668 - hypothetical protein, at 91,304 to 91,792
GFF2668
GFF2669 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179), at 91,789 to 92,859
GFF2669
GFF2670 - Acyl carrier protein, at 92,856 to 93,137
GFF2670
GFF2671 - Domain of unknown function / Efflux ABC transporter, permease protein, at 93,134 to 94,291
GFF2671
Position (kb) 91
92
93 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 90.794 kb on + strand, within GFF2667 at 90.905 kb on + strand, within GFF2667 at 91.118 kb on + strand, within GFF2667 at 91.119 kb on - strand, within GFF2667 at 91.220 kb on + strand, within GFF2667 at 91.221 kb on - strand, within GFF2667 at 91.221 kb on - strand, within GFF2667 at 91.665 kb on + strand, within GFF2668 at 91.665 kb on + strand, within GFF2668 at 91.666 kb on - strand, within GFF2668 at 91.666 kb on - strand, within GFF2668 at 91.843 kb on + strand at 91.843 kb on + strand at 91.919 kb on + strand, within GFF2669 at 92.173 kb on + strand, within GFF2669 at 92.173 kb on + strand, within GFF2669 at 92.173 kb on + strand, within GFF2669 at 92.173 kb on + strand, within GFF2669 at 92.174 kb on - strand, within GFF2669 at 92.973 kb on + strand, within GFF2670 at 93.362 kb on + strand, within GFF2671 at 93.362 kb on + strand, within GFF2671 at 93.362 kb on + strand, within GFF2671 at 93.363 kb on - strand, within GFF2671
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 90,794 + GFF2667 0.19 -1.7 90,905 + GFF2667 0.37 -0.6 91,118 + GFF2667 0.71 -0.6 91,119 - GFF2667 0.72 -1.6 91,220 + GFF2667 0.88 +0.5 91,221 - GFF2667 0.88 -1.1 91,221 - GFF2667 0.88 -0.7 91,665 + GFF2668 0.74 +3.1 91,665 + GFF2668 0.74 -2.5 91,666 - GFF2668 0.74 +0.4 91,666 - GFF2668 0.74 -0.4 91,843 + -1.3 91,843 + +0.2 91,919 + GFF2669 0.12 -0.5 92,173 + GFF2669 0.36 -1.5 92,173 + GFF2669 0.36 +0.2 92,173 + GFF2669 0.36 +0.2 92,173 + GFF2669 0.36 -2.2 92,174 - GFF2669 0.36 -3.1 92,973 + GFF2670 0.41 +1.1 93,362 + GFF2671 0.20 +0.6 93,362 + GFF2671 0.20 +0.9 93,362 + GFF2671 0.20 -1.5 93,363 - GFF2671 0.20 -1.6
Or see this region's nucleotide sequence