Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2655 and GFF2656 are separated by 155 nucleotides GFF2656 and GFF2657 overlap by 4 nucleotides
GFF2655 - Efflux ABC transporter for glutathione/L-cysteine, essential for assembly of bd-type respiratory oxidases => CydD subunit, at 75,489 to 77,177
GFF2655
GFF2656 - Acyltransferase 3, at 77,333 to 78,508
GFF2656
GFF2657 - putative oxidoreductase, nitronate monooxygenase family, at 78,505 to 79,467
GFF2657
Position (kb) 77
78
79 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 76.402 kb on + strand, within GFF2655 at 76.402 kb on + strand, within GFF2655 at 76.402 kb on + strand, within GFF2655 at 76.402 kb on + strand, within GFF2655 at 76.402 kb on + strand, within GFF2655 at 76.402 kb on + strand, within GFF2655 at 76.402 kb on + strand, within GFF2655 at 76.403 kb on - strand, within GFF2655 at 76.403 kb on - strand, within GFF2655 at 76.403 kb on - strand, within GFF2655 at 76.403 kb on - strand, within GFF2655 at 76.403 kb on - strand, within GFF2655 at 76.403 kb on - strand, within GFF2655 at 76.403 kb on - strand, within GFF2655 at 76.403 kb on - strand, within GFF2655 at 76.724 kb on - strand, within GFF2655 at 76.724 kb on - strand, within GFF2655 at 77.348 kb on + strand at 77.349 kb on - strand at 77.349 kb on - strand at 77.425 kb on - strand at 77.565 kb on + strand, within GFF2656 at 77.805 kb on + strand, within GFF2656 at 77.805 kb on + strand, within GFF2656 at 77.806 kb on - strand, within GFF2656 at 77.806 kb on - strand, within GFF2656 at 77.806 kb on - strand, within GFF2656 at 77.821 kb on - strand, within GFF2656 at 78.015 kb on + strand, within GFF2656 at 78.016 kb on - strand, within GFF2656 at 78.042 kb on + strand, within GFF2656 at 78.043 kb on - strand, within GFF2656 at 78.094 kb on + strand, within GFF2656 at 78.094 kb on + strand, within GFF2656 at 78.094 kb on + strand, within GFF2656 at 78.094 kb on + strand, within GFF2656 at 78.094 kb on + strand, within GFF2656 at 78.094 kb on + strand, within GFF2656 at 78.095 kb on - strand, within GFF2656 at 78.095 kb on - strand, within GFF2656 at 78.095 kb on - strand, within GFF2656 at 78.095 kb on - strand, within GFF2656 at 78.095 kb on - strand, within GFF2656 at 78.354 kb on + strand, within GFF2656 at 78.379 kb on - strand, within GFF2656 at 78.536 kb on + strand at 78.537 kb on - strand at 78.734 kb on + strand, within GFF2657 at 78.735 kb on - strand, within GFF2657 at 78.809 kb on + strand, within GFF2657 at 78.809 kb on + strand, within GFF2657 at 78.809 kb on + strand, within GFF2657 at 78.809 kb on + strand, within GFF2657 at 78.810 kb on - strand, within GFF2657 at 79.101 kb on - strand, within GFF2657 at 79.101 kb on - strand, within GFF2657 at 79.101 kb on - strand, within GFF2657 at 79.101 kb on - strand, within GFF2657 at 79.166 kb on + strand, within GFF2657 at 79.166 kb on + strand, within GFF2657 at 79.166 kb on + strand, within GFF2657 at 79.166 kb on + strand, within GFF2657 at 79.167 kb on - strand, within GFF2657 at 79.271 kb on + strand, within GFF2657 at 79.271 kb on + strand, within GFF2657 at 79.496 kb on + strand at 79.496 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 76,402 + GFF2655 0.54 -2.3 76,402 + GFF2655 0.54 +0.4 76,402 + GFF2655 0.54 -2.7 76,402 + GFF2655 0.54 -0.9 76,402 + GFF2655 0.54 +2.0 76,402 + GFF2655 0.54 -0.9 76,402 + GFF2655 0.54 -0.5 76,403 - GFF2655 0.54 -3.0 76,403 - GFF2655 0.54 -0.2 76,403 - GFF2655 0.54 -2.2 76,403 - GFF2655 0.54 -1.2 76,403 - GFF2655 0.54 -1.0 76,403 - GFF2655 0.54 -0.3 76,403 - GFF2655 0.54 +0.1 76,403 - GFF2655 0.54 -0.5 76,724 - GFF2655 0.73 +0.1 76,724 - GFF2655 0.73 +1.1 77,348 + +1.0 77,349 - -0.9 77,349 - +1.2 77,425 - -1.4 77,565 + GFF2656 0.20 -1.0 77,805 + GFF2656 0.40 -0.5 77,805 + GFF2656 0.40 +0.9 77,806 - GFF2656 0.40 -3.7 77,806 - GFF2656 0.40 +0.9 77,806 - GFF2656 0.40 +0.5 77,821 - GFF2656 0.41 +1.3 78,015 + GFF2656 0.58 +1.2 78,016 - GFF2656 0.58 +0.8 78,042 + GFF2656 0.60 +0.1 78,043 - GFF2656 0.60 +0.5 78,094 + GFF2656 0.65 -1.4 78,094 + GFF2656 0.65 -0.5 78,094 + GFF2656 0.65 +0.0 78,094 + GFF2656 0.65 -0.2 78,094 + GFF2656 0.65 -0.6 78,094 + GFF2656 0.65 -0.3 78,095 - GFF2656 0.65 +0.6 78,095 - GFF2656 0.65 -2.2 78,095 - GFF2656 0.65 +0.4 78,095 - GFF2656 0.65 +0.7 78,095 - GFF2656 0.65 +1.4 78,354 + GFF2656 0.87 -0.5 78,379 - GFF2656 0.89 -1.1 78,536 + +0.6 78,537 - +0.5 78,734 + GFF2657 0.24 -3.3 78,735 - GFF2657 0.24 +0.1 78,809 + GFF2657 0.32 -3.3 78,809 + GFF2657 0.32 -0.7 78,809 + GFF2657 0.32 +0.2 78,809 + GFF2657 0.32 -0.5 78,810 - GFF2657 0.32 +1.1 79,101 - GFF2657 0.62 +1.6 79,101 - GFF2657 0.62 -0.7 79,101 - GFF2657 0.62 -3.6 79,101 - GFF2657 0.62 -0.5 79,166 + GFF2657 0.69 -1.5 79,166 + GFF2657 0.69 -0.0 79,166 + GFF2657 0.69 +0.1 79,166 + GFF2657 0.69 -2.4 79,167 - GFF2657 0.69 -0.8 79,271 + GFF2657 0.80 +0.0 79,271 + GFF2657 0.80 +0.6 79,496 + +0.6 79,496 + -2.5
Or see this region's nucleotide sequence