Strain Fitness in Variovorax sp. SCN45 around GFF2602

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
6,647	+				+0.5
6,647	+				+0.2
6,648	-				+1.3
6,648	-				-0.9
6,648	-				-1.2
6,678	-				+0.6
6,759	+				+1.1
6,760	-				-1.5
6,760	-				-0.6
6,760	-				-1.8
6,760	-				+1.1
6,990	+		GFF2601	0.25	+0.8
6,990	+		GFF2601	0.25	+0.8
6,990	+		GFF2601	0.25	-1.2
6,990	+		GFF2601	0.25	+0.9
6,990	+		GFF2601	0.25	+0.5
6,991	-		GFF2601	0.25	-0.2
6,991	-		GFF2601	0.25	+1.7
6,991	-		GFF2601	0.25	+1.4
7,053	+		GFF2601	0.33	-3.5
7,054	-		GFF2601	0.33	-1.8
7,054	-		GFF2601	0.33	-2.0
7,054	-		GFF2601	0.33	-3.1
7,132	-		GFF2601	0.43	-0.2
7,132	-		GFF2601	0.43	-2.0
7,132	-		GFF2601	0.43	-0.5
7,164	+		GFF2601	0.47	+0.1
7,164	+		GFF2601	0.47	-1.9
7,164	+		GFF2601	0.47	+1.9
7,165	-		GFF2601	0.47	+1.0
7,165	-		GFF2601	0.47	-1.0
7,165	-		GFF2601	0.47	-1.3
7,165	-		GFF2601	0.47	+0.2
7,165	-		GFF2601	0.47	-0.4
7,206	+		GFF2601	0.52	+1.1
7,206	+		GFF2601	0.52	-1.4
7,206	+		GFF2601	0.52	-0.0
7,207	-		GFF2601	0.52	-1.0
7,207	-		GFF2601	0.52	-1.6
7,207	-		GFF2601	0.52	+1.7
7,207	-		GFF2601	0.52	+4.1
7,238	-		GFF2601	0.56	-1.7
7,706	+		GFF2602	0.18	+0.5
7,707	-		GFF2602	0.18	-2.0
7,707	-		GFF2602	0.18	+0.3
7,709	+		GFF2602	0.18	-1.5
7,766	+		GFF2602	0.27	+1.6
7,779	+		GFF2602	0.29	-0.2
8,042	+		GFF2602	0.68	-2.2
8,043	-		GFF2602	0.68	-1.9
8,090	+		GFF2602	0.75	-0.3
8,090	+		GFF2602	0.75	+1.5
8,090	+		GFF2602	0.75	+1.0
8,090	+		GFF2602	0.75	+0.1
8,090	+		GFF2602	0.75	-0.5
8,090	+		GFF2602	0.75	-2.4
8,090	+		GFF2602	0.75	+3.0
8,090	+		GFF2602	0.75	+0.3
8,091	-		GFF2602	0.75	-0.2
8,091	-		GFF2602	0.75	-0.7
8,091	-		GFF2602	0.75	+1.7
8,091	-		GFF2602	0.75	-2.0
8,091	-		GFF2602	0.75	-1.1
8,091	-		GFF2602	0.75	+1.3
8,115	+		GFF2602	0.79	-1.3
8,147	+		GFF2602	0.84	+0.1
8,234	+				-1.9
8,234	+				+0.7
8,235	-				+0.7
8,666	+		GFF2603	0.34	+0.8
8,666	+		GFF2603	0.34	+1.3
8,667	-		GFF2603	0.34	-1.7
8,667	-		GFF2603	0.34	-2.8
8,667	-		GFF2603	0.34	-0.2
8,744	+		GFF2603	0.42	-1.5
8,744	+		GFF2603	0.42	-0.9
8,744	+		GFF2603	0.42	+0.5
8,744	+		GFF2603	0.42	-3.2
8,744	+		GFF2603	0.42	-2.7
8,745	-		GFF2603	0.42	-0.2
8,745	-		GFF2603	0.42	-0.6
8,745	-		GFF2603	0.42	+1.4
8,795	+		GFF2603	0.47	-2.3
8,825	+		GFF2603	0.50	+0.7
8,825	+		GFF2603	0.50	-1.0
8,826	-		GFF2603	0.50	-0.9
8,826	-		GFF2603	0.50	+0.3
8,826	-		GFF2603	0.50	-1.8
8,870	+		GFF2603	0.54	-0.7
8,871	-		GFF2603	0.54	+0.4
9,116	+		GFF2603	0.78	+0.0
9,117	-		GFF2603	0.78	-1.3